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Swarm v3: towards tera-scale amplicon clustering.
Mahé F, Czech L, Stamatakis A, Quince C, de Vargas C, Dunthorn M, Rognes T. Mahé F, et al. Among authors: stamatakis a. Bioinformatics. 2021 Dec 22;38(1):267-269. doi: 10.1093/bioinformatics/btab493. Bioinformatics. 2021. PMID: 34244702 Free PMC article.
PUmPER: phylogenies updated perpetually.
Izquierdo-Carrasco F, Cazes J, Smith SA, Stamatakis A. Izquierdo-Carrasco F, et al. Among authors: stamatakis a. Bioinformatics. 2014 May 15;30(10):1476-7. doi: 10.1093/bioinformatics/btu053. Epub 2014 Jan 28. Bioinformatics. 2014. PMID: 24478338 Free PMC article.
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo.
Kapli P, Lutteropp S, Zhang J, Kobert K, Pavlidis P, Stamatakis A, Flouri T. Kapli P, et al. Among authors: stamatakis a. Bioinformatics. 2017 Jun 1;33(11):1630-1638. doi: 10.1093/bioinformatics/btx025. Bioinformatics. 2017. PMID: 28108445 Free PMC article.
In addition, Markov Chain Monte Carlo sampling provides a comprehensive evaluation of the inferred delimitation in just a few seconds for millions of steps, independently of tree size. AVAILABILITY AND IMPLEMENTATION: mPTP is implemented in C and is available for do …
In addition, Markov Chain Monte Carlo sampling provides a comprehensive evaluation of the inferred delimitation in just a few …
UniEuk: Time to Speak a Common Language in Protistology!
Berney C, Ciuprina A, Bender S, Brodie J, Edgcomb V, Kim E, Rajan J, Parfrey LW, Adl S, Audic S, Bass D, Caron DA, Cochrane G, Czech L, Dunthorn M, Geisen S, Glöckner FO, Mahé F, Quast C, Kaye JZ, Simpson AGB, Stamatakis A, Del Campo J, Yilmaz P, de Vargas C. Berney C, et al. Among authors: stamatakis a. J Eukaryot Microbiol. 2017 May;64(3):407-411. doi: 10.1111/jeu.12414. Epub 2017 Apr 21. J Eukaryot Microbiol. 2017. PMID: 28337822 Free PMC article. Review.
Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests.
Mahé F, de Vargas C, Bass D, Czech L, Stamatakis A, Lara E, Singer D, Mayor J, Bunge J, Sernaker S, Siemensmeyer T, Trautmann I, Romac S, Berney C, Kozlov A, Mitchell EAD, Seppey CVW, Egge E, Lentendu G, Wirth R, Trueba G, Dunthorn M. Mahé F, et al. Among authors: stamatakis a. Nat Ecol Evol. 2017 Mar 20;1(4):91. doi: 10.1038/s41559-017-0091. Nat Ecol Evol. 2017. PMID: 28812652
221 results