Marioni JC - Search Results

1

Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation.

Barile M, Imaz-Rosshandler I, Inzani I, Ghazanfar S, Nichols J, Marioni JC, Guibentif C, Göttgens B. Barile M, et al. Among authors: marioni jc. Genome Biol. 2021 Jul 5;22(1):197. doi: 10.1186/s13059-021-02414-y. Genome Biol. 2021. PMID: 34225769 Free PMC article.

2

Extensive compensatory cis-trans regulation in the evolution of mouse gene expression.

Goncalves A, Leigh-Brown S, Thybert D, Stefflova K, Turro E, Flicek P, Brazma A, Odom DT, Marioni JC. Goncalves A, et al. Among authors: marioni jc. Genome Res. 2012 Dec;22(12):2376-84. doi: 10.1101/gr.142281.112. Epub 2012 Aug 23. Genome Res. 2012. PMID: 22919075 Free PMC article.

3

High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA-tRNA interface.

Schmitt BM, Rudolph KL, Karagianni P, Fonseca NA, White RJ, Talianidis I, Odom DT, Marioni JC, Kutter C. Schmitt BM, et al. Among authors: marioni jc. Genome Res. 2014 Nov;24(11):1797-807. doi: 10.1101/gr.176784.114. Epub 2014 Aug 13. Genome Res. 2014. PMID: 25122613 Free PMC article.

4

Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5' splice site strength.

Wickramasinghe VO, Gonzàlez-Porta M, Perera D, Bartolozzi AR, Sibley CR, Hallegger M, Ule J, Marioni JC, Venkitaraman AR. Wickramasinghe VO, et al. Among authors: marioni jc. Genome Biol. 2015 Sep 21;16(1):201. doi: 10.1186/s13059-015-0749-3. Genome Biol. 2015. PMID: 26392272 Free PMC article.

5

Classification of low quality cells from single-cell RNA-seq data.

Ilicic T, Kim JK, Kolodziejczyk AA, Bagger FO, McCarthy DJ, Marioni JC, Teichmann SA. Ilicic T, et al. Among authors: marioni jc. Genome Biol. 2016 Feb 17;17:29. doi: 10.1186/s13059-016-0888-1. Genome Biol. 2016. PMID: 26887813 Free PMC article.

6

Beyond comparisons of means: understanding changes in gene expression at the single-cell level.

Vallejos CA, Richardson S, Marioni JC. Vallejos CA, et al. Among authors: marioni jc. Genome Biol. 2016 Apr 15;17:70. doi: 10.1186/s13059-016-0930-3. Genome Biol. 2016. PMID: 27083558 Free PMC article.

7

Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.

Lun AT, Bach K, Marioni JC. Lun AT, et al. Among authors: marioni jc. Genome Biol. 2016 Apr 27;17:75. doi: 10.1186/s13059-016-0947-7. Genome Biol. 2016. PMID: 27122128 Free PMC article.

8

Resolving early mesoderm diversification through single-cell expression profiling.

Scialdone A, Tanaka Y, Jawaid W, Moignard V, Wilson NK, Macaulay IC, Marioni JC, Göttgens B. Scialdone A, et al. Among authors: marioni jc. Nature. 2016 Jul 14;535(7611):289-293. doi: 10.1038/nature18633. Epub 2016 Jul 6. Nature. 2016. PMID: 27383781 Free PMC article.

9

Single-Cell Landscape of Transcriptional Heterogeneity and Cell Fate Decisions during Mouse Early Gastrulation.

Mohammed H, Hernando-Herraez I, Savino A, Scialdone A, Macaulay I, Mulas C, Chandra T, Voet T, Dean W, Nichols J, Marioni JC, Reik W. Mohammed H, et al. Among authors: marioni jc. Cell Rep. 2017 Aug 1;20(5):1215-1228. doi: 10.1016/j.celrep.2017.07.009. Cell Rep. 2017. PMID: 28768204 Free PMC article.

10

Assessing the reliability of spike-in normalization for analyses of single-cell RNA sequencing data.

Lun ATL, Calero-Nieto FJ, Haim-Vilmovsky L, Göttgens B, Marioni JC. Lun ATL, et al. Among authors: marioni jc. Genome Res. 2017 Nov;27(11):1795-1806. doi: 10.1101/gr.222877.117. Epub 2017 Oct 13. Genome Res. 2017. PMID: 29030468 Free PMC article.

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