Makhamreh A - Search Results

1

Nanopore signal deviations from pseudouridine modifications in RNA are sequence-specific: quantification requires dedicated synthetic controls.

Makhamreh A, Tavakoli S, Fallahi A, Kang X, Gamper H, Nabizadehmashhadtoroghi M, Jain M, Hou YM, Rouhanifard SH, Wanunu M. Makhamreh A, et al. Sci Rep. 2024 Sep 28;14(1):22457. doi: 10.1038/s41598-024-72994-9. Sci Rep. 2024. PMID: 39341872 Free PMC article.

2

Probing enzyme-dependent pseudouridylation using direct RNA sequencing to assess neuronal epitranscriptome plasticity.

Fanari O, Tavakoli S, Qiu Y, Makhamreh A, Nian K, Akeson S, Meseonznik M, McCormick CA, Bloch D, Gamper H, Jain M, Hou YM, Wanunu M, Rouhanifard SH. Fanari O, et al. Among authors: makhamreh a. bioRxiv [Preprint]. 2024 Nov 26:2024.03.26.586895. doi: 10.1101/2024.03.26.586895. bioRxiv. 2024. PMID: 38585714 Free PMC article. Preprint.

3

Enzymatic synthesis of RNA standards for mapping and quantifying RNA modifications in sequencing analysis.

Gamper H, McCormick C, Makhamreh A, Wanunu M, Rouhanifard SH, Hou YM. Gamper H, et al. Among authors: makhamreh a. Methods Enzymol. 2023;692:127-153. doi: 10.1016/bs.mie.2023.04.024. Epub 2023 May 15. Methods Enzymol. 2023. PMID: 37925177

4

Author Correction: Unidirectional single-file transport of full-length proteins through a nanopore.

Yu L, Kang X, Li F, Mehrafrooz B, Makhamreh A, Fallahi A, Foster JC, Aksimentiev A, Chen M, Wanunu M. Yu L, et al. Among authors: makhamreh a. Nat Biotechnol. 2023 Oct;41(10):1483. doi: 10.1038/s41587-023-01995-2. Nat Biotechnol. 2023. PMID: 37735269 No abstract available.

5

Semi-quantitative detection of pseudouridine modifications and type I/II hypermodifications in human mRNAs using direct long-read sequencing.

Tavakoli S, Nabizadeh M, Makhamreh A, Gamper H, McCormick CA, Rezapour NK, Hou YM, Wanunu M, Rouhanifard SH. Tavakoli S, et al. Among authors: makhamreh a. Nat Commun. 2023 Jan 19;14(1):334. doi: 10.1038/s41467-023-35858-w. Nat Commun. 2023. PMID: 36658122 Free PMC article.

6

Unidirectional single-file transport of full-length proteins through a nanopore.

Yu L, Kang X, Li F, Mehrafrooz B, Makhamreh A, Fallahi A, Foster JC, Aksimentiev A, Chen M, Wanunu M. Yu L, et al. Among authors: makhamreh a. Nat Biotechnol. 2023 Aug;41(8):1130-1139. doi: 10.1038/s41587-022-01598-3. Epub 2023 Jan 9. Nat Biotechnol. 2023. PMID: 36624148 Free PMC article.

7

Discrimination of RNA fiber structures using solid-state nanopores.

Tripathi P, Chandler M, Maffeo CM, Fallahi A, Makhamreh A, Halman J, Aksimentiev A, Afonin KA, Wanunu M. Tripathi P, et al. Among authors: makhamreh a. Nanoscale. 2022 May 16;14(18):6866-6875. doi: 10.1039/d1nr08002d. Nanoscale. 2022. PMID: 35441627 Free PMC article.

8

Transcriptional repression by FEZF2 restricts alternative identities of cortical projection neurons.

Tsyporin J, Tastad D, Ma X, Nehme A, Finn T, Huebner L, Liu G, Gallardo D, Makhamreh A, Roberts JM, Katzman S, Sestan N, McConnell SK, Yang Z, Qiu S, Chen B. Tsyporin J, et al. Among authors: makhamreh a. Cell Rep. 2021 Jun 22;35(12):109269. doi: 10.1016/j.celrep.2021.109269. Cell Rep. 2021. PMID: 34161768 Free PMC article.

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