Kohlbacher O - Search Results

1

DIAproteomics: A Multifunctional Data Analysis Pipeline for Data-Independent Acquisition Proteomics and Peptidomics.

Bichmann L, Gupta S, Rosenberger G, Kuchenbecker L, Sachsenberg T, Ewels P, Alka O, Pfeuffer J, Kohlbacher O, Röst H. Bichmann L, et al. Among authors: kohlbacher o. J Proteome Res. 2021 Jul 2;20(7):3758-3766. doi: 10.1021/acs.jproteome.1c00123. Epub 2021 Jun 21. J Proteome Res. 2021. PMID: 34153189 Free article.

2

TOPPView: an open-source viewer for mass spectrometry data.

Sturm M, Kohlbacher O. Sturm M, et al. Among authors: kohlbacher o. J Proteome Res. 2009 Jul;8(7):3760-3. doi: 10.1021/pr900171m. J Proteome Res. 2009. PMID: 19425593

3

Improving peptide identification in proteome analysis by a two-dimensional retention time filtering approach.

Pfeifer N, Leinenbach A, Huber CG, Kohlbacher O. Pfeifer N, et al. Among authors: kohlbacher o. J Proteome Res. 2009 Aug;8(8):4109-15. doi: 10.1021/pr900064b. J Proteome Res. 2009. PMID: 19492844

4

SherLoc2: a high-accuracy hybrid method for predicting subcellular localization of proteins.

Briesemeister S, Blum T, Brady S, Lam Y, Kohlbacher O, Shatkay H. Briesemeister S, et al. Among authors: kohlbacher o. J Proteome Res. 2009 Nov;8(11):5363-6. doi: 10.1021/pr900665y. J Proteome Res. 2009. PMID: 19764776

5

OpenMS and TOPP: open source software for LC-MS data analysis.

Reinert K, Kohlbacher O. Reinert K, et al. Among authors: kohlbacher o. Methods Mol Biol. 2010;604:201-11. doi: 10.1007/978-1-60761-444-9_14. Methods Mol Biol. 2010. PMID: 20013373

6

Optimal de novo design of MRM experiments for rapid assay development in targeted proteomics.

Bertsch A, Jung S, Zerck A, Pfeifer N, Nahnsen S, Henneges C, Nordheim A, Kohlbacher O. Bertsch A, et al. Among authors: kohlbacher o. J Proteome Res. 2010 May 7;9(5):2696-704. doi: 10.1021/pr1001803. J Proteome Res. 2010. PMID: 20201589

7

Probabilistic consensus scoring improves tandem mass spectrometry peptide identification.

Nahnsen S, Bertsch A, Rahnenführer J, Nordheim A, Kohlbacher O. Nahnsen S, et al. Among authors: kohlbacher o. J Proteome Res. 2011 Aug 5;10(8):3332-43. doi: 10.1021/pr2002879. Epub 2011 Jun 23. J Proteome Res. 2011. PMID: 21644507

8

TOPPAS: a graphical workflow editor for the analysis of high-throughput proteomics data.

Junker J, Bielow C, Bertsch A, Sturm M, Reinert K, Kohlbacher O. Junker J, et al. Among authors: kohlbacher o. J Proteome Res. 2012 Jul 6;11(7):3914-20. doi: 10.1021/pr300187f. Epub 2012 May 24. J Proteome Res. 2012. PMID: 22583024

9

Tools for label-free peptide quantification.

Nahnsen S, Bielow C, Reinert K, Kohlbacher O. Nahnsen S, et al. Among authors: kohlbacher o. Mol Cell Proteomics. 2013 Mar;12(3):549-56. doi: 10.1074/mcp.R112.025163. Epub 2012 Dec 17. Mol Cell Proteomics. 2013. PMID: 23250051 Free PMC article. Review.

10

PTMeta: increasing identification rates of modified peptides using modification prescanning and meta-analysis.

Nahnsen S, Sachsenberg T, Kohlbacher O. Nahnsen S, et al. Among authors: kohlbacher o. Proteomics. 2013 Mar;13(6):1042-51. doi: 10.1002/pmic.201200315. Proteomics. 2013. PMID: 23335442

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