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Ten simple rules for making a software tool workflow-ready.
Brack P, Crowther P, Soiland-Reyes S, Owen S, Lowe D, Williams AR, Groom Q, Dillen M, Coppens F, Grüning B, Eguinoa I, Ewels P, Goble C. Brack P, et al. Among authors: ewels p. PLoS Comput Biol. 2022 Mar 24;18(3):e1009823. doi: 10.1371/journal.pcbi.1009823. eCollection 2022 Mar. PLoS Comput Biol. 2022. PMID: 35324885 Free PMC article. No abstract available.
The nf-core framework for community-curated bioinformatics pipelines.
Ewels PA, Peltzer A, Fillinger S, Patel H, Alneberg J, Wilm A, Garcia MU, Di Tommaso P, Nahnsen S. Ewels PA, et al. Nat Biotechnol. 2020 Mar;38(3):276-278. doi: 10.1038/s41587-020-0439-x. Nat Biotechnol. 2020. PMID: 32055031 No abstract available.
HiCUP: pipeline for mapping and processing Hi-C data.
Wingett S, Ewels P, Furlan-Magaril M, Nagano T, Schoenfelder S, Fraser P, Andrews S. Wingett S, et al. Among authors: ewels p. F1000Res. 2015 Nov 20;4:1310. doi: 10.12688/f1000research.7334.1. eCollection 2015. F1000Res. 2015. PMID: 26835000 Free PMC article.
Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women.
Engström K, Wojdacz TK, Marabita F, Ewels P, Käller M, Vezzi F, Prezza N, Gruselius J, Vahter M, Broberg K. Engström K, et al. Among authors: ewels p. Arch Toxicol. 2017 May;91(5):2067-2078. doi: 10.1007/s00204-016-1879-4. Epub 2016 Nov 12. Arch Toxicol. 2017. PMID: 27838757 Free PMC article.
27 results