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3D genomics across the tree of life reveals condensin II as a determinant of architecture type.
Hoencamp C, Dudchenko O, Elbatsh AMO, Brahmachari S, Raaijmakers JA, van Schaik T, Sedeño Cacciatore Á, Contessoto VG, van Heesbeen RGHP, van den Broek B, Mhaskar AN, Teunissen H, St Hilaire BG, Weisz D, Omer AD, Pham M, Colaric Z, Yang Z, Rao SSP, Mitra N, Lui C, Yao W, Khan R, Moroz LL, Kohn A, St Leger J, Mena A, Holcroft K, Gambetta MC, Lim F, Farley E, Stein N, Haddad A, Chauss D, Mutlu AS, Wang MC, Young ND, Hildebrandt E, Cheng HH, Knight CJ, Burnham TLU, Hovel KA, Beel AJ, Mattei PJ, Kornberg RD, Warren WC, Cary G, Gómez-Skarmeta JL, Hinman V, Lindblad-Toh K, Di Palma F, Maeshima K, Multani AS, Pathak S, Nel-Themaat L, Behringer RR, Kaur P, Medema RH, van Steensel B, de Wit E, Onuchic JN, Di Pierro M, Lieberman Aiden E, Rowland BD. Hoencamp C, et al. Among authors: khan r. Science. 2021 May 28;372(6545):984-989. doi: 10.1126/science.abe2218. Science. 2021. PMID: 34045355 Free PMC article.
Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome.
Edwards RJ, Field MA, Ferguson JM, Dudchenko O, Keilwagen J, Rosen BD, Johnson GS, Rice ES, Hillier D, Hammond JM, Towarnicki SG, Omer A, Khan R, Skvortsova K, Bogdanovic O, Zammit RA, Aiden EL, Warren WC, Ballard JWO. Edwards RJ, et al. Among authors: khan r. BMC Genomics. 2021 Mar 16;22(1):188. doi: 10.1186/s12864-021-07493-6. BMC Genomics. 2021. PMID: 33726677 Free PMC article.
A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population.
Wilder AP, Dudchenko O, Curry C, Korody M, Turbek SP, Daly M, Misuraca A, Wang G, Khan R, Weisz D, Fronczek J, Aiden EL, Houck ML, Shier DM, Ryder OA, Steiner CC. Wilder AP, et al. Among authors: khan r. Genome Biol Evol. 2022 Aug 3;14(8):evac122. doi: 10.1093/gbe/evac122. Genome Biol Evol. 2022. PMID: 35894178 Free PMC article.
A Chromosome-length Assembly of the Black Petaltail (Tanypteryx hageni) Dragonfly.
Tolman ER, Beatty CD, Bush J, Kohli M, Moreno CM, Ware JL, Weber KS, Khan R, Maheshwari C, Weisz D, Dudchenko O, Aiden EL, Frandsen PB. Tolman ER, et al. Among authors: khan r. Genome Biol Evol. 2023 Mar 3;15(3):evad024. doi: 10.1093/gbe/evad024. Genome Biol Evol. 2023. PMID: 36807678 Free PMC article.
De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome.
Lamb S, Taylor AM, Hughes TA, McMillan BR, Larsen RT, Khan R, Weisz D, Dudchenko O, Aiden EL, Edelman NB, Frandsen PB. Lamb S, et al. Among authors: khan r. GigaByte. 2021 Nov 22;2021:gigabyte34. doi: 10.46471/gigabyte.34. eCollection 2021. GigaByte. 2021. PMID: 36824347 Free PMC article.
Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample.
Sandoval-Velasco M, Dudchenko O, Rodríguez JA, Pérez Estrada C, Dehasque M, Fontsere C, Mak SST, Khan R, Contessoto VG, Oliveira Junior AB, Kalluchi A, Zubillaga Herrera BJ, Jeong J, Roy RP, Christopher I, Weisz D, Omer AD, Batra SS, Shamim MS, Durand NC, O'Connell B, Roca AL, Plikus MV, Kusliy MA, Romanenko SA, Lemskaya NA, Serdyukova NA, Modina SA, Perelman PL, Kizilova EA, Baiborodin SI, Rubtsov NB, Machol G, Rath K, Mahajan R, Kaur P, Gnirke A, Garcia-Treviño I, Coke R, Flanagan JP, Pletch K, Ruiz-Herrera A, Plotnikov V, Pavlov IS, Pavlova NI, Protopopov AV, Di Pierro M, Graphodatsky AS, Lander ES, Rowley MJ, Wolynes PG, Onuchic JN, Dalén L, Marti-Renom MA, Gilbert MTP, Aiden EL. Sandoval-Velasco M, et al. Among authors: khan r. Cell. 2024 Jul 11;187(14):3541-3562.e51. doi: 10.1016/j.cell.2024.06.002. Cell. 2024. PMID: 38996487 Free article.
4,918 results