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Author Correction: HIV-1 diversity considerations in the application of the Intact Proviral DNA Assay (IPDA).
Kinloch NN, Ren Y, Alberto WDC, Dong W, Khadka P, Huang SH, Mota TM, Wilson A, Shahid A, Kirkby D, Harris M, Kovacs C, Benko E, Ostrowski MA, Del Rio Estrada PM, Wimpelberg A, Cannon C, Hardy WD, MacLaren L, Goldstein H, Brumme CJ, Lee GQ, Lynch RM, Brumme ZL, Jones RB. Kinloch NN, et al. Among authors: kirkby d. Nat Commun. 2021 May 13;12(1):2958. doi: 10.1038/s41467-021-23515-z. Nat Commun. 2021. PMID: 33986282 Free PMC article. No abstract available.
HIV drug resistance testing by high-multiplex "wide" sequencing on the MiSeq instrument.
Lapointe HR, Dong W, Lee GQ, Bangsberg DR, Martin JN, Mocello AR, Boum Y, Karakas A, Kirkby D, Poon AF, Harrigan PR, Brumme CJ. Lapointe HR, et al. Among authors: kirkby d. Antimicrob Agents Chemother. 2015 Nov;59(11):6824-33. doi: 10.1128/AAC.01490-15. Epub 2015 Aug 17. Antimicrob Agents Chemother. 2015. PMID: 26282425 Free PMC article.
Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing.
Lee ER, Parkin N, Jennings C, Brumme CJ, Enns E, Casadellà M, Howison M, Coetzer M, Avila-Rios S, Capina R, Marinier E, Van Domselaar G, Noguera-Julian M, Kirkby D, Knaggs J, Harrigan R, Quiñones-Mateu M, Paredes R, Kantor R, Sandstrom P, Ji H. Lee ER, et al. Among authors: kirkby d. Sci Rep. 2020 Jan 31;10(1):1634. doi: 10.1038/s41598-020-58544-z. Sci Rep. 2020. PMID: 32005884 Free PMC article.
HIV-1 diversity considerations in the application of the Intact Proviral DNA Assay (IPDA).
Kinloch NN, Ren Y, Conce Alberto WD, Dong W, Khadka P, Huang SH, Mota TM, Wilson A, Shahid A, Kirkby D, Harris M, Kovacs C, Benko E, Ostrowski MA, Del Rio Estrada PM, Wimpelberg A, Cannon C, Hardy WD, MacLaren L, Goldstein H, Brumme CJ, Lee GQ, Lynch RM, Brumme ZL, Jones RB. Kinloch NN, et al. Among authors: kirkby d. Nat Commun. 2021 Jan 8;12(1):165. doi: 10.1038/s41467-020-20442-3. Nat Commun. 2021. PMID: 33420062 Free PMC article.
Serial infection with SARS-CoV-2 Omicron BA.1 and BA.2 following three-dose COVID-19 vaccination.
Lapointe HR, Mwimanzi F, Cheung PK, Sang Y, Yaseen F, Kalikawe R, Datwani S, Waterworth R, Umviligihozo G, Ennis S, Young L, Dong W, Kirkby D, Burns L, Leung V, Holmes DT, DeMarco ML, Simons J, Matic N, Montaner JSG, Brumme CJ, Prystajecky N, Niikura M, Lowe CF, Romney MG, Brockman MA, Brumme ZL. Lapointe HR, et al. Among authors: kirkby d. Front Immunol. 2022 Sep 6;13:947021. doi: 10.3389/fimmu.2022.947021. eCollection 2022. Front Immunol. 2022. PMID: 36148225 Free PMC article.
HIV reservoirs are dominated by genetically younger and clonally enriched proviruses.
Kinloch NN, Shahid A, Dong W, Kirkby D, Jones BR, Beelen CJ, MacMillan D, Lee GQ, Mota TM, Sudderuddin H, Barad E, Harris M, Brumme CJ, Jones RB, Brockman MA, Joy JB, Brumme ZL. Kinloch NN, et al. Among authors: kirkby d. mBio. 2023 Dec 19;14(6):e0241723. doi: 10.1128/mbio.02417-23. Epub 2023 Nov 16. mBio. 2023. PMID: 37971267 Free PMC article.
HIV reservoirs are dominated by genetically younger and clonally enriched proviruses.
Kinloch NN, Shahid A, Dong W, Kirkby D, Jones BR, Beelen CJ, MacMillan D, Lee GQ, Mota TM, Sudderuddin H, Barad E, Harris M, Brumme CJ, Jones RB, Brockman MA, Joy JB, Brumme ZL. Kinloch NN, et al. Among authors: kirkby d. bioRxiv [Preprint]. 2023 Apr 13:2023.04.12.536611. doi: 10.1101/2023.04.12.536611. bioRxiv. 2023. Update in: mBio. 2023 Dec 19;14(6):e0241723. doi: 10.1128/mbio.02417-23 PMID: 37090500 Free PMC article. Updated. Preprint.
Search for CP violation in B0-B0 mixing using partial reconstruction of B0→D*- Xℓ+ νℓ and a kaon tag.
Lees JP, Poireau V, Tisserand V, Grauges E, Palano A, Eigen G, Stugu B, Brown DN, Kerth LT, Kolomensky YG, Lee MJ, Lynch G, Koch H, Schroeder T, Hearty C, Mattison TS, McKenna JA, So RY, Khan A, Blinov VE, Buzykaev AR, Druzhinin VP, Golubev VB, Kravchenko EA, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Yushkov AN, Kirkby D, Lankford AJ, Mandelkern M, Dey B, Gary JW, Long O, Vitug GM, Campagnari C, Franco Sevilla M, Hong TM, Kovalskyi D, Richman JD, West CA, Eisner AM, Lockman WS, Martinez AJ, Schumm BA, Seiden A, Chao DS, Cheng CH, Echenard B, Flood KT, Hitlin DG, Ongmongkolkul P, Porter FC, Andreassen R, Huard Z, Meadows BT, Sokoloff MD, Sun L, Bloom PC, Ford WT, Gaz A, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Spaan B, Schubert KR, Schwierz R, Bernard D, Verderi M, Playfer S, Bettoni D, Bozzi C, Calabrese R, Cibinetto G, Fioravanti E, Garzia I, Luppi E, Piemontese L, Santoro V, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Martellotti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Bhuyan B, Prasad V, Morii M, Adametz A, Uwer U, Lacker HM, Dau… See abstract for full author list ➔ Lees JP, et al. Among authors: kirkby d. Phys Rev Lett. 2013 Sep 6;111(10):101802. doi: 10.1103/PhysRevLett.111.101802. Epub 2013 Sep 3. Phys Rev Lett. 2013. PMID: 25166652 Free article.
220 results