Michel AM - Search Results

1

Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data.

Kiniry SJ, Judge CE, Michel AM, Baranov PV. Kiniry SJ, et al. Among authors: michel am. Nucleic Acids Res. 2021 Jul 2;49(W1):W662-W670. doi: 10.1093/nar/gkab323. Nucleic Acids Res. 2021. PMID: 33950201 Free PMC article.

2

Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences.

Ivanov IP, Firth AE, Michel AM, Atkins JF, Baranov PV. Ivanov IP, et al. Among authors: michel am. Nucleic Acids Res. 2011 May;39(10):4220-34. doi: 10.1093/nar/gkr007. Epub 2011 Jan 25. Nucleic Acids Res. 2011. PMID: 21266472 Free PMC article.

3

Observation of dually decoded regions of the human genome using ribosome profiling data.

Michel AM, Choudhury KR, Firth AE, Ingolia NT, Atkins JF, Baranov PV. Michel AM, et al. Genome Res. 2012 Nov;22(11):2219-29. doi: 10.1101/gr.133249.111. Epub 2012 May 16. Genome Res. 2012. PMID: 22593554 Free PMC article.

4

Ribosome profiling: a Hi-Def monitor for protein synthesis at the genome-wide scale.

Michel AM, Baranov PV. Michel AM, et al. Wiley Interdiscip Rev RNA. 2013 Sep-Oct;4(5):473-90. doi: 10.1002/wrna.1172. Epub 2013 May 20. Wiley Interdiscip Rev RNA. 2013. PMID: 23696005 Free PMC article. Review.

5

GWIPS-viz: development of a ribo-seq genome browser.

Michel AM, Fox G, M Kiran A, De Bo C, O'Connor PB, Heaphy SM, Mullan JP, Donohue CA, Higgins DG, Baranov PV. Michel AM, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D859-64. doi: 10.1093/nar/gkt1035. Epub 2013 Oct 31. Nucleic Acids Res. 2014. PMID: 24185699 Free PMC article.

6

Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning.

Michel AM, Andreev DE, Baranov PV. Michel AM, et al. BMC Bioinformatics. 2014 Nov 21;15(1):380. doi: 10.1186/s12859-014-0380-4. BMC Bioinformatics. 2014. PMID: 25413677 Free PMC article.

7

GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms.

Michel AM, Ahern AM, Donohue CA, Baranov PV. Michel AM, et al. Proteomics. 2015 Jul;15(14):2410-6. doi: 10.1002/pmic.201400603. Epub 2015 Apr 23. Proteomics. 2015. PMID: 25736862 Free PMC article.

8

Illuminating translation with ribosome profiling spectra.

Baranov PV, Michel AM. Baranov PV, et al. Among authors: michel am. Nat Methods. 2016 Feb;13(2):123-4. doi: 10.1038/nmeth.3738. Nat Methods. 2016. PMID: 26820545 No abstract available.

9

RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data.

Michel AM, Mullan JP, Velayudhan V, O'Connor PB, Donohue CA, Baranov PV. Michel AM, et al. RNA Biol. 2016;13(3):316-9. doi: 10.1080/15476286.2016.1141862. Epub 2016 Jan 29. RNA Biol. 2016. PMID: 26821742 Free PMC article.

10

Improving data workflow systems with cloud services and use of open data for bioinformatics research.

Karim MR, Michel A, Zappa A, Baranov P, Sahay R, Rebholz-Schuhmann D. Karim MR, et al. Brief Bioinform. 2018 Sep 28;19(5):1035-1050. doi: 10.1093/bib/bbx039. Brief Bioinform. 2018. PMID: 28419324 Free PMC article. Review.

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