Ondrechen MJ - Search Results

1

Analysis of electrostatic coupling throughout the laboratory evolution of a designed retroaldolase.

Coulther TA, Pott M, Zeymer C, Hilvert D, Ondrechen MJ. Coulther TA, et al. Among authors: ondrechen mj. Protein Sci. 2021 Aug;30(8):1617-1627. doi: 10.1002/pro.4099. Epub 2021 May 24. Protein Sci. 2021. PMID: 33938058 Free PMC article.

2

Enhanced performance in prediction of protein active sites with THEMATICS and support vector machines.

Tong W, Williams RJ, Wei Y, Murga LF, Ko J, Ondrechen MJ. Tong W, et al. Among authors: ondrechen mj. Protein Sci. 2008 Feb;17(2):333-41. doi: 10.1110/ps.073213608. Epub 2007 Dec 20. Protein Sci. 2008. PMID: 18096640 Free PMC article.

3

Prediction of distal residue participation in enzyme catalysis.

Brodkin HR, DeLateur NA, Somarowthu S, Mills CL, Novak WR, Beuning PJ, Ringe D, Ondrechen MJ. Brodkin HR, et al. Among authors: ondrechen mj. Protein Sci. 2015 May;24(5):762-78. doi: 10.1002/pro.2648. Epub 2015 Apr 2. Protein Sci. 2015. PMID: 25627867 Free PMC article.

4

Prediction of Active Site and Distal Residues in E. coli DNA Polymerase III alpha Polymerase Activity.

Parasuram R, Coulther TA, Hollander JM, Keston-Smith E, Ondrechen MJ, Beuning PJ. Parasuram R, et al. Among authors: ondrechen mj. Biochemistry. 2018 Feb 20;57(7):1063-1072. doi: 10.1021/acs.biochem.7b01004. Epub 2018 Jan 31. Biochemistry. 2018. PMID: 29341605

5

Functional classification of protein structures by local structure matching in graph representation.

Mills CL, Garg R, Lee JS, Tian L, Suciu A, Cooperman GD, Beuning PJ, Ondrechen MJ. Mills CL, et al. Among authors: ondrechen mj. Protein Sci. 2018 Jun;27(6):1125-1135. doi: 10.1002/pro.3416. Epub 2018 Apr 27. Protein Sci. 2018. PMID: 29604149 Free PMC article.

6

Synthesis of benzoylbenzamide derivatives of 17α-E-vinyl estradiol and evaluation as ligands for the estrogen receptor-α ligand binding domain.

Hanson RN, McCaskill E, Hua E, Tongcharoensirikul P, Dilis R, Silver JL, Coulther TA, Ondrechen MJ, Labaree D, Hochberg RB. Hanson RN, et al. Among authors: ondrechen mj. Steroids. 2019 Apr;144:15-20. doi: 10.1016/j.steroids.2019.02.003. Epub 2019 Feb 6. Steroids. 2019. PMID: 30738075

7

Amino acid interactions that facilitate enzyme catalysis.

Coulther TA, Ko J, Ondrechen MJ. Coulther TA, et al. Among authors: ondrechen mj. J Chem Phys. 2021 May 21;154(19):195101. doi: 10.1063/5.0041156. J Chem Phys. 2021. PMID: 34240918

8

Electrostatic fingerprints of catalytically active amino acids in enzymes.

Iyengar SM, Barnsley KK, Xu R, Prystupa A, Ondrechen MJ. Iyengar SM, et al. Among authors: ondrechen mj. Protein Sci. 2022 May;31(5):e4291. doi: 10.1002/pro.4291. Protein Sci. 2022. PMID: 35481659 Free PMC article.

9

A tale of two isomerases: compact versus extended active sites in ketosteroid isomerase and phosphoglucose isomerase.

Somarowthu S, Brodkin HR, D'Aquino JA, Ringe D, Ondrechen MJ, Beuning PJ. Somarowthu S, et al. Among authors: ondrechen mj. Biochemistry. 2011 Nov 1;50(43):9283-95. doi: 10.1021/bi201089v. Epub 2011 Oct 4. Biochemistry. 2011. PMID: 21970785

10

Probing remote residues important for catalysis in Escherichia coli ornithine transcarbamoylase.

Ngu L, Winters JN, Nguyen K, Ramos KE, DeLateur NA, Makowski L, Whitford PC, Ondrechen MJ, Beuning PJ. Ngu L, et al. Among authors: ondrechen mj. PLoS One. 2020 Feb 6;15(2):e0228487. doi: 10.1371/journal.pone.0228487. eCollection 2020. PLoS One. 2020. PMID: 32027716 Free PMC article.

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