Pokhrel N - Search Results

1

Generation of Fluorescent Versions of Saccharomyces cerevisiae RPA to Study the Conformational Dynamics of Its ssDNA-Binding Domains.

Kuppa S, Pokhrel N, Corless E, Origanti S, Antony E. Kuppa S, et al. Among authors: pokhrel n. Methods Mol Biol. 2021;2281:151-168. doi: 10.1007/978-1-0716-1290-3_9. Methods Mol Biol. 2021. PMID: 33847957 Free PMC article.

2

Evidence That the Pi Release Event Is the Rate-Limiting Step in the Nitrogenase Catalytic Cycle.

Yang ZY, Ledbetter R, Shaw S, Pence N, Tokmina-Lukaszewska M, Eilers B, Guo Q, Pokhrel N, Cash VL, Dean DR, Antony E, Bothner B, Peters JW, Seefeldt LC. Yang ZY, et al. Among authors: pokhrel n. Biochemistry. 2016 Jul 5;55(26):3625-35. doi: 10.1021/acs.biochem.6b00421. Epub 2016 Jun 22. Biochemistry. 2016. PMID: 27295169

3

Monitoring Replication Protein A (RPA) dynamics in homologous recombination through site-specific incorporation of non-canonical amino acids.

Pokhrel N, Origanti S, Davenport EP, Gandhi D, Kaniecki K, Mehl RA, Greene EC, Dockendorff C, Antony E. Pokhrel N, et al. Nucleic Acids Res. 2017 Sep 19;45(16):9413-9426. doi: 10.1093/nar/gkx598. Nucleic Acids Res. 2017. PMID: 28934470 Free PMC article.

4

A force sensor that converts fluorescence signal into force measurement utilizing short looped DNA.

Mustafa G, Chuang CY, Roy WA, Farhath MM, Pokhrel N, Ma Y, Nagasawa K, Antony E, Comstock MJ, Basu S, Balci H. Mustafa G, et al. Among authors: pokhrel n. Biosens Bioelectron. 2018 Dec 15;121:34-40. doi: 10.1016/j.bios.2018.08.073. Epub 2018 Aug 31. Biosens Bioelectron. 2018. PMID: 30195120 Free PMC article.

5

A structural and dynamic model for the assembly of Replication Protein A on single-stranded DNA.

Yates LA, Aramayo RJ, Pokhrel N, Caldwell CC, Kaplan JA, Perera RL, Spies M, Antony E, Zhang X. Yates LA, et al. Among authors: pokhrel n. Nat Commun. 2018 Dec 21;9(1):5447. doi: 10.1038/s41467-018-07883-7. Nat Commun. 2018. PMID: 30575763 Free PMC article.

6

Dynamics and selective remodeling of the DNA-binding domains of RPA.

Pokhrel N, Caldwell CC, Corless EI, Tillison EA, Tibbs J, Jocic N, Tabei SMA, Wold MS, Spies M, Antony E. Pokhrel N, et al. Nat Struct Mol Biol. 2019 Feb;26(2):129-136. doi: 10.1038/s41594-018-0181-y. Epub 2019 Feb 4. Nat Struct Mol Biol. 2019. PMID: 30723327 Free PMC article.

7

Phosphate removal and recovery using immobilized phosphate binding proteins.

Venkiteshwaran K, Pokhrel N, Hussein F, Antony E, Mayer BK. Venkiteshwaran K, et al. Among authors: pokhrel n. Water Res X. 2018 Oct 5;1:100003. doi: 10.1016/j.wroa.2018.09.003. eCollection 2018 Dec 1. Water Res X. 2018. PMID: 31194063 Free PMC article.

8

KIF3A accelerates KIF3C within the kinesin-2 heterodimer to generate symmetrical phosphate release rates for each processive step.

Quinn SM, Vargason T, Pokhrel N, Antony E, Hahn J, Gilbert SP. Quinn SM, et al. Among authors: pokhrel n. J Biol Chem. 2021 Jan-Jun;296:100020. doi: 10.1074/jbc.RA120.015272. Epub 2020 Nov 22. J Biol Chem. 2021. PMID: 33144324 Free PMC article.

9

Hydrogen-deuterium exchange reveals a dynamic DNA-binding map of replication protein A.

Ahmad F, Patterson A, Deveryshetty J, Mattice JR, Pokhrel N, Bothner B, Antony E. Ahmad F, et al. Among authors: pokhrel n. Nucleic Acids Res. 2021 Feb 22;49(3):1455-1469. doi: 10.1093/nar/gkaa1288. Nucleic Acids Res. 2021. PMID: 33444457 Free PMC article.

10

The Srs2 helicase dampens DNA damage checkpoint by recycling RPA from chromatin.

Dhingra N, Kuppa S, Wei L, Pokhrel N, Baburyan S, Meng X, Antony E, Zhao X. Dhingra N, et al. Among authors: pokhrel n. Proc Natl Acad Sci U S A. 2021 Feb 23;118(8):e2020185118. doi: 10.1073/pnas.2020185118. Proc Natl Acad Sci U S A. 2021. PMID: 33602817 Free PMC article.

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