Zhang L - Search Results

1

p53 mediates target gene association with nuclear speckles for amplified RNA expression.

Alexander KA, Coté A, Nguyen SC, Zhang L, Gholamalamdari O, Agudelo-Garcia P, Lin-Shiao E, Tanim KMA, Lim J, Biddle N, Dunagin MC, Good CR, Mendoza MR, Little SC, Belmont A, Joyce EF, Raj A, Berger SL. Alexander KA, et al. Among authors: zhang l. Mol Cell. 2021 Apr 15;81(8):1666-1681.e6. doi: 10.1016/j.molcel.2021.03.006. Epub 2021 Apr 5. Mol Cell. 2021. PMID: 33823140 Free PMC article.

2

CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci.

Tasan I, Sustackova G, Zhang L, Kim J, Sivaguru M, HamediRad M, Wang Y, Genova J, Ma J, Belmont AS, Zhao H. Tasan I, et al. Among authors: zhang l. Nucleic Acids Res. 2018 Sep 28;46(17):e100. doi: 10.1093/nar/gky501. Nucleic Acids Res. 2018. PMID: 29912475 Free PMC article.

3

Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler.

Chen Y, Zhang Y, Wang Y, Zhang L, Brinkman EK, Adam SA, Goldman R, van Steensel B, Ma J, Belmont AS. Chen Y, et al. Among authors: zhang l, zhang y. J Cell Biol. 2018 Nov 5;217(11):4025-4048. doi: 10.1083/jcb.201807108. Epub 2018 Aug 28. J Cell Biol. 2018. PMID: 30154186 Free PMC article.

4

TSA-seq reveals a largely conserved genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes.

Zhang L, Zhang Y, Chen Y, Gholamalamdari O, Wang Y, Ma J, Belmont AS. Zhang L, et al. Among authors: zhang y. Genome Res. 2021 Feb;31(2):251-264. doi: 10.1101/gr.266239.120. Epub 2020 Dec 18. Genome Res. 2021. PMID: 33355299 Free PMC article.

5

SPIN reveals genome-wide landscape of nuclear compartmentalization.

Wang Y, Zhang Y, Zhang R, van Schaik T, Zhang L, Sasaki T, Peric-Hupkes D, Chen Y, Gilbert DM, van Steensel B, Belmont AS, Ma J. Wang Y, et al. Among authors: zhang l, zhang r, zhang y. Genome Biol. 2021 Jan 14;22(1):36. doi: 10.1186/s13059-020-02253-3. Genome Biol. 2021. PMID: 33446254 Free PMC article.

6

Measuring Cytological Proximity of Chromosomal Loci to Defined Nuclear Compartments with TSA-seq.

Zhang L, Chen Y, Belmont AS. Zhang L, et al. Methods Mol Biol. 2022;2532:145-186. doi: 10.1007/978-1-0716-2497-5_8. Methods Mol Biol. 2022. PMID: 35867249

7

Nucleolus and centromere TSA-Seq reveals variable localization of heterochromatin in different cell types.

Kumar P, Gholamalamdari O, Zhang Y, Zhang L, Vertii A, van Schaik T, Peric-Hupkes D, Sasaki T, Gilbert DM, van Steensel B, Ma J, Kaufman PD, Belmont AS. Kumar P, et al. Among authors: zhang l, zhang y. bioRxiv [Preprint]. 2023 Nov 1:2023.10.29.564613. doi: 10.1101/2023.10.29.564613. bioRxiv. 2023. Update in: Commun Biol. 2024 Sep 13;7(1):1135. doi: 10.1038/s42003-024-06838-7 PMID: 37961445 Free PMC article. Updated. Preprint.

8

Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function.

Gholamalamdari O, van Schaik T, Wang Y, Kumar P, Zhang L, Zhang Y, Gonzalez GAH, Vouzas AE, Zhao PA, Gilbert DM, Ma J, van Steensel B, Belmont AS. Gholamalamdari O, et al. Among authors: zhang l, zhang y. bioRxiv [Preprint]. 2024 Jul 17:2024.04.23.590809. doi: 10.1101/2024.04.23.590809. bioRxiv. 2024. PMID: 38712201 Free PMC article. Preprint.

9

Nucleolus and centromere Tyramide Signal Amplification-Seq reveals variable localization of heterochromatin in different cell types.

Kumar P, Gholamalamdari O, Zhang Y, Zhang L, Vertii A, van Schaik T, Peric-Hupkes D, Sasaki T, Gilbert DM, van Steensel B, Ma J, Kaufman PD, Belmont AS. Kumar P, et al. Among authors: zhang l, zhang y. Commun Biol. 2024 Sep 13;7(1):1135. doi: 10.1038/s42003-024-06838-7. Commun Biol. 2024. PMID: 39271748 Free PMC article.

10

Ack promotes tissue growth via phosphorylation and suppression of the Hippo pathway component Expanded.

Hu L, Xu J, Yin MX, Zhang L, Lu Y, Wu W, Xue Z, Ho MS, Gao G, Zhao Y, Zhang L. Hu L, et al. Among authors: zhang l. Cell Discov. 2016 Feb 23;2:15047. doi: 10.1038/celldisc.2015.47. eCollection 2016. Cell Discov. 2016. PMID: 27462444 Free PMC article.

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