Sandve GK - Search Results

1

A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding.

Akbar R, Robert PA, Pavlović M, Jeliazkov JR, Snapkov I, Slabodkin A, Weber CR, Scheffer L, Miho E, Haff IH, Haug DTT, Lund-Johansen F, Safonova Y, Sandve GK, Greiff V. Akbar R, et al. Among authors: sandve gk. Cell Rep. 2021 Mar 16;34(11):108856. doi: 10.1016/j.celrep.2021.108856. Cell Rep. 2021. PMID: 33730590 Free article.

2

immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking.

Weber CR, Akbar R, Yermanos A, Pavlović M, Snapkov I, Sandve GK, Reddy ST, Greiff V. Weber CR, et al. Among authors: sandve gk. Bioinformatics. 2020 Jun 1;36(11):3594-3596. doi: 10.1093/bioinformatics/btaa158. Bioinformatics. 2020. PMID: 32154832 Free PMC article.

3

T cell receptor repertoire as a potential diagnostic marker for celiac disease.

Yao Y, Zia A, Neumann RS, Pavlovic M, Balaban G, Lundin KEA, Sandve GK, Qiao SW. Yao Y, et al. Among authors: sandve gk. Clin Immunol. 2021 Jan;222:108621. doi: 10.1016/j.clim.2020.108621. Epub 2020 Nov 13. Clin Immunol. 2021. PMID: 33197618 Free article.

4

Ten simple rules for quick and dirty scientific programming.

Balaban G, Grytten I, Rand KD, Scheffer L, Sandve GK. Balaban G, et al. Among authors: sandve gk. PLoS Comput Biol. 2021 Mar 11;17(3):e1008549. doi: 10.1371/journal.pcbi.1008549. eCollection 2021 Mar. PLoS Comput Biol. 2021. PMID: 33705383 Free PMC article. No abstract available.

5

The Future of Blood Testing Is the Immunome.

Arnaout RA, Prak ETL, Schwab N, Rubelt F; Adaptive Immune Receptor Repertoire Community. Arnaout RA, et al. Front Immunol. 2021 Mar 15;12:626793. doi: 10.3389/fimmu.2021.626793. eCollection 2021. Front Immunol. 2021. PMID: 33790897 Free PMC article.

6

Individualized VDJ recombination predisposes the available Ig sequence space.

Slabodkin A, Chernigovskaya M, Mikocziova I, Akbar R, Scheffer L, Pavlović M, Bashour H, Snapkov I, Mehta BB, Weber CR, Gutierrez-Marcos J, Sollid LM, Haff IH, Sandve GK, Robert PA, Greiff V. Slabodkin A, et al. Among authors: sandve gk. Genome Res. 2021 Dec;31(12):2209-2224. doi: 10.1101/gr.275373.121. Epub 2021 Nov 23. Genome Res. 2021. PMID: 34815307 Free PMC article.

7

TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences.

Dahal-Koirala S, Balaban G, Neumann RS, Scheffer L, Lundin KEA, Greiff V, Sollid LM, Qiao SW, Sandve GK. Dahal-Koirala S, et al. Among authors: sandve gk. Brief Bioinform. 2022 Mar 10;23(2):bbab566. doi: 10.1093/bib/bbab566. Brief Bioinform. 2022. PMID: 35062022 Free PMC article.

8

In silico proof of principle of machine learning-based antibody design at unconstrained scale.

Akbar R, Robert PA, Weber CR, Widrich M, Frank R, Pavlović M, Scheffer L, Chernigovskaya M, Snapkov I, Slabodkin A, Mehta BB, Miho E, Lund-Johansen F, Andersen JT, Hochreiter S, Hobæk Haff I, Klambauer G, Sandve GK, Greiff V. Akbar R, et al. Among authors: sandve gk. MAbs. 2022 Jan-Dec;14(1):2031482. doi: 10.1080/19420862.2022.2031482. MAbs. 2022. PMID: 35377271 Free PMC article.

9

Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification.

Kanduri C, Pavlović M, Scheffer L, Motwani K, Chernigovskaya M, Greiff V, Sandve GK. Kanduri C, et al. Among authors: sandve gk. Gigascience. 2022 May 25;11:giac046. doi: 10.1093/gigascience/giac046. Gigascience. 2022. PMID: 35639633 Free PMC article.

10

CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching.

Rognes T, Scheffer L, Greiff V, Sandve GK. Rognes T, et al. Among authors: sandve gk. Bioinformatics. 2022 Sep 2;38(17):4230-4232. doi: 10.1093/bioinformatics/btac505. Bioinformatics. 2022. PMID: 35852318 Free PMC article.

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