Sayyari E - Search Results

1

EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets.

Cantrell K, Fedarko MW, Rahman G, McDonald D, Yang Y, Zaw T, Gonzalez A, Janssen S, Estaki M, Haiminen N, Beck KL, Zhu Q, Sayyari E, Morton JT, Armstrong G, Tripathi A, Gauglitz JM, Marotz C, Matteson NL, Martino C, Sanders JG, Carrieri AP, Song SJ, Swafford AD, Dorrestein PC, Andersen KG, Parida L, Kim HC, Vázquez-Baeza Y, Knight R. Cantrell K, et al. Among authors: sayyari e. mSystems. 2021 Mar 16;6(2):e01216-20. doi: 10.1128/mSystems.01216-20. mSystems. 2021. PMID: 33727399 Free PMC article.

2

Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.

Zhu Q, Mai U, Pfeiffer W, Janssen S, Asnicar F, Sanders JG, Belda-Ferre P, Al-Ghalith GA, Kopylova E, McDonald D, Kosciolek T, Yin JB, Huang S, Salam N, Jiao JY, Wu Z, Xu ZZ, Cantrell K, Yang Y, Sayyari E, Rabiee M, Morton JT, Podell S, Knights D, Li WJ, Huttenhower C, Segata N, Smarr L, Mirarab S, Knight R. Zhu Q, et al. Among authors: sayyari e. Nat Commun. 2019 Dec 2;10(1):5477. doi: 10.1038/s41467-019-13443-4. Nat Commun. 2019. PMID: 31792218 Free PMC article.

3

Multi-allele species reconstruction using ASTRAL.

Rabiee M, Sayyari E, Mirarab S. Rabiee M, et al. Among authors: sayyari e. Mol Phylogenet Evol. 2019 Jan;130:286-296. doi: 10.1016/j.ympev.2018.10.033. Epub 2018 Oct 26. Mol Phylogenet Evol. 2019. PMID: 30393186

4

Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction.

Mai U, Sayyari E, Mirarab S. Mai U, et al. Among authors: sayyari e. PLoS One. 2017 Aug 11;12(8):e0182238. doi: 10.1371/journal.pone.0182238. eCollection 2017. PLoS One. 2017. PMID: 28800608 Free PMC article.

5

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees.

Zhang C, Rabiee M, Sayyari E, Mirarab S. Zhang C, et al. Among authors: sayyari e. BMC Bioinformatics. 2018 May 8;19(Suppl 6):153. doi: 10.1186/s12859-018-2129-y. BMC Bioinformatics. 2018. PMID: 29745866 Free PMC article.

6

DiscoVista: Interpretable visualizations of gene tree discordance.

Sayyari E, Whitfield JB, Mirarab S. Sayyari E, et al. Mol Phylogenet Evol. 2018 May;122:110-115. doi: 10.1016/j.ympev.2018.01.019. Epub 2018 Feb 5. Mol Phylogenet Evol. 2018. PMID: 29421312

7

TADA: phylogenetic augmentation of microbiome samples enhances phenotype classification.

Sayyari E, Kawas B, Mirarab S. Sayyari E, et al. Bioinformatics. 2019 Jul 15;35(14):i31-i40. doi: 10.1093/bioinformatics/btz394. Bioinformatics. 2019. PMID: 31510701 Free PMC article.

8

Anchoring quartet-based phylogenetic distances and applications to species tree reconstruction.

Sayyari E, Mirarab S. Sayyari E, et al. BMC Genomics. 2016 Nov 11;17(Suppl 10):783. doi: 10.1186/s12864-016-3098-z. BMC Genomics. 2016. PMID: 28185574 Free PMC article.

9

Fragmentary Gene Sequences Negatively Impact Gene Tree and Species Tree Reconstruction.

Sayyari E, Whitfield JB, Mirarab S. Sayyari E, et al. Mol Biol Evol. 2017 Dec 1;34(12):3279-3291. doi: 10.1093/molbev/msx261. Mol Biol Evol. 2017. PMID: 29029241

10

Testing for Polytomies in Phylogenetic Species Trees Using Quartet Frequencies.

Sayyari E, Mirarab S. Sayyari E, et al. Genes (Basel). 2018 Feb 28;9(3):132. doi: 10.3390/genes9030132. Genes (Basel). 2018. PMID: 29495636 Free PMC article.

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