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Ten simple rules for quick and dirty scientific programming.
Balaban G, Grytten I, Rand KD, Scheffer L, Sandve GK. Balaban G, et al. Among authors: sandve gk. PLoS Comput Biol. 2021 Mar 11;17(3):e1008549. doi: 10.1371/journal.pcbi.1008549. eCollection 2021 Mar. PLoS Comput Biol. 2021. PMID: 33705383 Free PMC article. No abstract available.
Ten simple rules for reproducible computational research.
Sandve GK, Nekrutenko A, Taylor J, Hovig E. Sandve GK, et al. PLoS Comput Biol. 2013 Oct;9(10):e1003285. doi: 10.1371/journal.pcbi.1003285. Epub 2013 Oct 24. PLoS Comput Biol. 2013. PMID: 24204232 Free PMC article. No abstract available.
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome.
Simovski B, Vodák D, Gundersen S, Domanska D, Azab A, Holden L, Holden M, Grytten I, Rand K, Drabløs F, Johansen M, Mora A, Lund-Andersen C, Fromm B, Eskeland R, Gabrielsen OS, Ferkingstad E, Nakken S, Bengtsen M, Nederbragt AJ, Thorarensen HS, Akse JA, Glad I, Hovig E, Sandve GK. Simovski B, et al. Among authors: sandve gk. Gigascience. 2017 Jul 1;6(7):1-12. doi: 10.1093/gigascience/gix032. Gigascience. 2017. PMID: 28459977 Free PMC article.
Coordinates and intervals in graph-based reference genomes.
Rand KD, Grytten I, Nederbragt AJ, Storvik GO, Glad IK, Sandve GK. Rand KD, et al. Among authors: sandve gk. BMC Bioinformatics. 2017 May 18;18(1):263. doi: 10.1186/s12859-017-1678-9. BMC Bioinformatics. 2017. PMID: 28521770 Free PMC article.
Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes.
Grytten I, Rand KD, Nederbragt AJ, Storvik GO, Glad IK, Sandve GK. Grytten I, et al. Among authors: sandve gk. PLoS Comput Biol. 2019 Feb 19;15(2):e1006731. doi: 10.1371/journal.pcbi.1006731. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30779737 Free PMC article.
Individualized VDJ recombination predisposes the available Ig sequence space.
Slabodkin A, Chernigovskaya M, Mikocziova I, Akbar R, Scheffer L, Pavlović M, Bashour H, Snapkov I, Mehta BB, Weber CR, Gutierrez-Marcos J, Sollid LM, Haff IH, Sandve GK, Robert PA, Greiff V. Slabodkin A, et al. Among authors: sandve gk. Genome Res. 2021 Dec;31(12):2209-2224. doi: 10.1101/gr.275373.121. Epub 2021 Nov 23. Genome Res. 2021. PMID: 34815307 Free PMC article.
88 results