Oostenbrink C - Search Results

1

Exploring the structure and dynamics of proteins in soil organic matter.

Gotsmy M, Escalona Y, Oostenbrink C, Petrov D. Gotsmy M, et al. Among authors: oostenbrink c. Proteins. 2021 Mar 5;89(8):925-36. doi: 10.1002/prot.26070. Online ahead of print. Proteins. 2021. PMID: 33675059 Free PMC article.

2

Lipid A from lipopolysaccharide recognition: structure, dynamics and cooperativity by molecular dynamics simulations.

Garate JA, Oostenbrink C. Garate JA, et al. Among authors: oostenbrink c. Proteins. 2013 Apr;81(4):658-74. doi: 10.1002/prot.24223. Epub 2013 Jan 15. Proteins. 2013. PMID: 23184816

3

A systematic framework for molecular dynamics simulations of protein post-translational modifications.

Petrov D, Margreitter C, Grandits M, Oostenbrink C, Zagrovic B. Petrov D, et al. Among authors: oostenbrink c. PLoS Comput Biol. 2013;9(7):e1003154. doi: 10.1371/journal.pcbi.1003154. Epub 2013 Jul 18. PLoS Comput Biol. 2013. PMID: 23874192 Free PMC article.

4

Molecular dynamics simulations of the auxin-binding protein 1 in complex with indole-3-acetic acid and naphthalen-1-acetic acid.

Grandits M, Oostenbrink C. Grandits M, et al. Among authors: oostenbrink c. Proteins. 2014 Oct;82(10):2744-55. doi: 10.1002/prot.24639. Epub 2014 Jul 17. Proteins. 2014. PMID: 25043515

5

Vienna Soil-Organic-Matter Modeler--Generating condensed-phase models of humic substances.

Sündermann A, Solc R, Tunega D, Haberhauer G, Gerzabek MH, Oostenbrink C. Sündermann A, et al. Among authors: oostenbrink c. J Mol Graph Model. 2015 Nov;62:253-261. doi: 10.1016/j.jmgm.2015.10.007. Epub 2015 Oct 19. J Mol Graph Model. 2015. PMID: 26521208 Free article.

6

Molecular Dynamics Simulations of the Standard Leonardite Humic Acid: Microscopic Analysis of the Structure and Dynamics.

Petrov D, Tunega D, Gerzabek MH, Oostenbrink C. Petrov D, et al. Among authors: oostenbrink c. Environ Sci Technol. 2017 May 16;51(10):5414-5424. doi: 10.1021/acs.est.7b00266. Epub 2017 May 3. Environ Sci Technol. 2017. PMID: 28440077 Free article.

7

Ion-induced modification of the sucrose network and its impact on melting of freeze-dried liposomes. DSC and molecular dynamics study.

Bakarić D, Petrov D, Mouvenchery YK, Heiβler S, Oostenbrink C, Schaumann GE. Bakarić D, et al. Among authors: oostenbrink c. Chem Phys Lipids. 2018 Jan;210:38-46. doi: 10.1016/j.chemphyslip.2017.11.015. Epub 2017 Nov 24. Chem Phys Lipids. 2018. PMID: 29179944

8

The two cathepsin B-like proteases of Arabidopsis thaliana are closely related enzymes with discrete endopeptidase and carboxydipeptidase activities.

Porodko A, Cirnski A, Petrov D, Raab T, Paireder M, Mayer B, Maresch D, Nika L, Biniossek ML, Gallois P, Schilling O, Oostenbrink C, Novinec M, Mach L. Porodko A, et al. Among authors: oostenbrink c. Biol Chem. 2018 Sep 25;399(10):1223-1235. doi: 10.1515/hsz-2018-0186. Biol Chem. 2018. PMID: 29924726 Free article.

9

An NMR and MD study of complexes of bacteriophage lambda lysozyme with tetra- and hexa-N-acetylchitohexaose.

Turupcu A, Bowen AM, Di Paolo A, Matagne A, Oostenbrink C, Redfield C, Smith LJ. Turupcu A, et al. Among authors: oostenbrink c. Proteins. 2020 Jan;88(1):82-93. doi: 10.1002/prot.25770. Epub 2019 Jul 26. Proteins. 2020. PMID: 31294851 Free PMC article.

10

Polarization Effects in Simulations of Kaolinite-Water Interfaces.

Galicia-Andrés E, Petrov D, Gerzabek MH, Oostenbrink C, Tunega D. Galicia-Andrés E, et al. Among authors: oostenbrink c. Langmuir. 2019 Nov 26;35(47):15086-15099. doi: 10.1021/acs.langmuir.9b02945. Epub 2019 Nov 12. Langmuir. 2019. PMID: 31663747 Free PMC article.

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