Jayaram B - Search Results

1

Mask blast with a new chemical logic of amino acids for improved protein function prediction.

Pathak A, Roy T, Edubilli A, Jayaram B. Pathak A, et al. Among authors: jayaram b. Proteins. 2021 Feb 28. doi: 10.1002/prot.26069. Online ahead of print. Proteins. 2021. PMID: 33641206

2

Symmetrization of the backbone of nucleic acids: a molecular dynamics study.

Pant P, Pathak A, Jayaram B. Pant P, et al. Among authors: jayaram b. J Biomol Struct Dyn. 2020 Feb;38(3):673-681. doi: 10.1080/07391102.2019.1585292. Epub 2019 Mar 26. J Biomol Struct Dyn. 2020. PMID: 30821653

3

Symmetric Nucleosides as Potent Purine Nucleoside Phosphorylase Inhibitors.

Pant P, Pathak A, Jayaram B. Pant P, et al. Among authors: jayaram b. J Phys Chem B. 2021 Mar 25;125(11):2856-2862. doi: 10.1021/acs.jpcb.0c10553. Epub 2021 Mar 13. J Phys Chem B. 2021. PMID: 33715357

4

Seq2Enz: An application of mask BLAST methodology with a new chemical logic of amino acids for improved enzyme function prediction.

Pathak A, Jayaram B. Pathak A, et al. Among authors: jayaram b. Biochim Biophys Acta Proteins Proteom. 2022 Jan;1870(1):140721. doi: 10.1016/j.bbapap.2021.140721. Epub 2021 Oct 6. Biochim Biophys Acta Proteins Proteom. 2022. PMID: 34624539

5

Bicyclo-DNA mimics with enhanced protein binding affinities: insights from molecular dynamics simulations.

Pant P, Pathak A, Jayaram B. Pant P, et al. Among authors: jayaram b. J Biomol Struct Dyn. 2023 Jun;41(9):4040-4047. doi: 10.1080/07391102.2022.2061594. Epub 2022 Apr 9. J Biomol Struct Dyn. 2023. PMID: 35403569

6

Computational protocol for predicting the binding affinities of zinc containing metalloprotein-ligand complexes.

Jain T, Jayaram B. Jain T, et al. Among authors: jayaram b. Proteins. 2007 Jun 1;67(4):1167-78. doi: 10.1002/prot.21332. Proteins. 2007. PMID: 17380508

7

Proteins: sequence to structure and function--current status.

Shenoy SR, Jayaram B. Shenoy SR, et al. Among authors: jayaram b. Curr Protein Pept Sci. 2010 Nov;11(7):498-514. doi: 10.2174/138920310794109094. Curr Protein Pept Sci. 2010. PMID: 20887265 Review.

8

AADS--an automated active site identification, docking, and scoring protocol for protein targets based on physicochemical descriptors.

Singh T, Biswas D, Jayaram B. Singh T, et al. Among authors: jayaram b. J Chem Inf Model. 2011 Oct 24;51(10):2515-27. doi: 10.1021/ci200193z. Epub 2011 Sep 15. J Chem Inf Model. 2011. PMID: 21877713

9

Capturing native/native like structures with a physico-chemical metric (pcSM) in protein folding.

Mishra A, Rao S, Mittal A, Jayaram B. Mishra A, et al. Among authors: jayaram b. Biochim Biophys Acta. 2013 Aug;1834(8):1520-31. doi: 10.1016/j.bbapap.2013.04.023. Epub 2013 May 7. Biochim Biophys Acta. 2013. PMID: 23665455

10

Physico-chemical fingerprinting of RNA genes.

Singh A, Mishra A, Khosravi A, Khandelwal G, Jayaram B. Singh A, et al. Among authors: jayaram b. Nucleic Acids Res. 2017 Apr 20;45(7):e47. doi: 10.1093/nar/gkw1236. Nucleic Acids Res. 2017. PMID: 27932456 Free PMC article.

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