Toffano-Nioche C - Search Results

1

Identification of RNAs bound by Hfq reveals widespread RNA partners and a sporulation regulator in the human pathogen Clostridioides difficile.

Boudry P, Piattelli E, Drouineau E, Peltier J, Boutserin A, Lejars M, Hajnsdorf E, Monot M, Dupuy B, Martin-Verstraete I, Gautheret D, Toffano-Nioche C, Soutourina O. Boudry P, et al. Among authors: toffano nioche c. RNA Biol. 2021 Nov;18(11):1931-1952. doi: 10.1080/15476286.2021.1882180. Epub 2021 Feb 25. RNA Biol. 2021. PMID: 33629931 Free PMC article.

2

Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus.

Toffano-Nioche C, Nguyen AN, Kuchly C, Ott A, Gautheret D, Bouloc P, Jacq A. Toffano-Nioche C, et al. RNA. 2012 Dec;18(12):2201-19. doi: 10.1261/rna.033324.112. Epub 2012 Oct 24. RNA. 2012. PMID: 23097430 Free PMC article.

3

Detection of non-coding RNA in bacteria and archaea using the DETR'PROK Galaxy pipeline.

Toffano-Nioche C, Luo Y, Kuchly C, Wallon C, Steinbach D, Zytnicki M, Jacq A, Gautheret D. Toffano-Nioche C, et al. Methods. 2013 Sep 1;63(1):60-5. doi: 10.1016/j.ymeth.2013.06.003. Epub 2013 Jun 25. Methods. 2013. PMID: 23806640 Free article.

4

RNA at 92 °C: the non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi.

Toffano-Nioche C, Ott A, Crozat E, Nguyen AN, Zytnicki M, Leclerc F, Forterre P, Bouloc P, Gautheret D. Toffano-Nioche C, et al. RNA Biol. 2013 Jul;10(7):1211-20. doi: 10.4161/rna.25567. Epub 2013 Jul 2. RNA Biol. 2013. PMID: 23884177 Free PMC article.

5

Revisiting the structure/function relationships of H/ACA(-like) RNAs: a unified model for Euryarchaea and Crenarchaea.

Toffano-Nioche C, Gautheret D, Leclerc F. Toffano-Nioche C, et al. Nucleic Acids Res. 2015 Sep 18;43(16):7744-61. doi: 10.1093/nar/gkv756. Epub 2015 Aug 3. Nucleic Acids Res. 2015. PMID: 26240384 Free PMC article.

6

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.

Couvin D, Bernheim A, Toffano-Nioche C, Touchon M, Michalik J, Néron B, Rocha EPC, Vergnaud G, Gautheret D, Pourcel C. Couvin D, et al. Among authors: toffano nioche c. Nucleic Acids Res. 2018 Jul 2;46(W1):W246-W251. doi: 10.1093/nar/gky425. Nucleic Acids Res. 2018. PMID: 29790974 Free PMC article.

7

The conserved regulatory RNA RsaE down-regulates the arginine degradation pathway in Staphylococcus aureus.

Rochat T, Bohn C, Morvan C, Le Lam TN, Razvi F, Pain A, Toffano-Nioche C, Ponien P, Jacq A, Jacquet E, Fey PD, Gautheret D, Bouloc P. Rochat T, et al. Among authors: toffano nioche c. Nucleic Acids Res. 2018 Sep 28;46(17):8803-8816. doi: 10.1093/nar/gky584. Nucleic Acids Res. 2018. PMID: 29986060 Free PMC article.

8

Accurate characterization of Escherichia coli tRNA modifications with a simple method of deep-sequencing library preparation.

Wang J, Toffano-Nioche C, Lorieux F, Gautheret D, Lehmann J. Wang J, et al. Among authors: toffano nioche c. RNA Biol. 2021 Jan;18(1):33-46. doi: 10.1080/15476286.2020.1790871. Epub 2020 Jul 26. RNA Biol. 2021. PMID: 32618488 Free PMC article.

9

Rfam 14: expanded coverage of metagenomic, viral and microRNA families.

Kalvari I, Nawrocki EP, Ontiveros-Palacios N, Argasinska J, Lamkiewicz K, Marz M, Griffiths-Jones S, Toffano-Nioche C, Gautheret D, Weinberg Z, Rivas E, Eddy SR, Finn RD, Bateman A, Petrov AI. Kalvari I, et al. Among authors: toffano nioche c. Nucleic Acids Res. 2021 Jan 8;49(D1):D192-D200. doi: 10.1093/nar/gkaa1047. Nucleic Acids Res. 2021. PMID: 33211869 Free PMC article.

10

Transinteractome analysis reveals distinct niche requirements for isotype-based plasma cell subsets in the bone marrow.

Bonaud A, Larraufie P, Khamyath M, Szachnowski U, Flint SM, Brunel-Meunier N, Delhommeau F, Munier A, Lönnberg T, Toffano-Nioche C, Gautheret D, Balabanian K, Espéli M. Bonaud A, et al. Among authors: toffano nioche c. Eur J Immunol. 2023 Sep;53(9):e2250334. doi: 10.1002/eji.202250334. Epub 2023 Jun 28. Eur J Immunol. 2023. PMID: 37377335 Free article.

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