Barry DJ - Search Results

1

A FIJI macro for quantifying pattern in extracellular matrix.

Wershof E, Park D, Barry DJ, Jenkins RP, Rullan A, Wilkins A, Schlegelmilch K, Roxanis I, Anderson KI, Bates PA, Sahai E. Wershof E, et al. Among authors: barry dj. Life Sci Alliance. 2021 Jan 27;4(3):e202000880. doi: 10.26508/lsa.202000880. Print 2021 Mar. Life Sci Alliance. 2021. PMID: 33504622 Free PMC article.

2

Matrix feedback enables diverse higher-order patterning of the extracellular matrix.

Wershof E, Park D, Jenkins RP, Barry DJ, Sahai E, Bates PA. Wershof E, et al. Among authors: barry dj. PLoS Comput Biol. 2019 Oct 28;15(10):e1007251. doi: 10.1371/journal.pcbi.1007251. eCollection 2019 Oct. PLoS Comput Biol. 2019. PMID: 31658254 Free PMC article.

3

Fission yeast condensin contributes to interphase chromatin organization and prevents transcription-coupled DNA damage.

Kakui Y, Barrington C, Barry DJ, Gerguri T, Fu X, Bates PA, Khatri BS, Uhlmann F. Kakui Y, et al. Among authors: barry dj. Genome Biol. 2020 Nov 5;21(1):272. doi: 10.1186/s13059-020-02183-0. Genome Biol. 2020. PMID: 33153481 Free PMC article.

4

Open source software for quantification of cell migration, protrusions, and fluorescence intensities.

Barry DJ, Durkin CH, Abella JV, Way M. Barry DJ, et al. J Cell Biol. 2015 Apr 13;209(1):163-80. doi: 10.1083/jcb.201501081. Epub 2015 Apr 6. J Cell Biol. 2015. PMID: 25847537 Free PMC article.

5

GIANI - open-source software for automated analysis of 3D microscopy images.

Barry DJ, Gerri C, Bell DM, D'Antuono R, Niakan KK. Barry DJ, et al. J Cell Sci. 2022 May 15;135(10):jcs259511. doi: 10.1242/jcs.259511. Epub 2022 May 17. J Cell Sci. 2022. PMID: 35502739 Free PMC article.

6

Automated staging of zebrafish embryos with deep learning.

Jones RA, Renshaw MJ, Barry DJ. Jones RA, et al. Among authors: barry dj. Life Sci Alliance. 2023 Oct 26;7(1):e202302351. doi: 10.26508/lsa.202302351. Print 2024 Jan. Life Sci Alliance. 2023. PMID: 37884343 Free PMC article.

7

Quantifying the branching frequency of virtual filamentous microbes using fractal analysis.

Barry DJ. Barry DJ. Biotechnol Bioeng. 2013 Feb;110(2):437-47. doi: 10.1002/bit.24709. Epub 2012 Sep 4. Biotechnol Bioeng. 2013. PMID: 22948928

8

Condensin-mediated remodeling of the mitotic chromatin landscape in fission yeast.

Kakui Y, Rabinowitz A, Barry DJ, Uhlmann F. Kakui Y, et al. Among authors: barry dj. Nat Genet. 2017 Oct;49(10):1553-1557. doi: 10.1038/ng.3938. Epub 2017 Aug 21. Nat Genet. 2017. PMID: 28825727 Free PMC article.

9

Clathrin potentiates vaccinia-induced actin polymerization to facilitate viral spread.

Humphries AC, Dodding MP, Barry DJ, Collinson LM, Durkin CH, Way M. Humphries AC, et al. Among authors: barry dj. Cell Host Microbe. 2012 Sep 13;12(3):346-59. doi: 10.1016/j.chom.2012.08.002. Cell Host Microbe. 2012. PMID: 22980331 Free article.

10

Ena/VASP proteins cooperate with the WAVE complex to regulate the actin cytoskeleton.

Chen XJ, Squarr AJ, Stephan R, Chen B, Higgins TE, Barry DJ, Martin MC, Rosen MK, Bogdan S, Way M. Chen XJ, et al. Among authors: barry dj. Dev Cell. 2014 Sep 8;30(5):569-84. doi: 10.1016/j.devcel.2014.08.001. Dev Cell. 2014. PMID: 25203209 Free PMC article.

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