Xu D - Search Results

1

DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism.

Wang D, Zhang Z, Jiang Y, Mao Z, Wang D, Lin H, Xu D. Wang D, et al. Among authors: xu d. Nucleic Acids Res. 2021 May 7;49(8):e46. doi: 10.1093/nar/gkab016. Nucleic Acids Res. 2021. PMID: 33503258 Free PMC article.

2

RDF SKETCH MAPS - KNOWLEDGE COMPLEXITY REDUCTION FOR PRECISION MEDICINE ANALYTICS.

Thanintorn N, Wang J, Ersoy I, Al-Taie Z, Jiang Y, Wang D, Verma M, Joshi T, Hammer R, Xu D, Shin D. Thanintorn N, et al. Among authors: xu d. Pac Symp Biocomput. 2016;21:417-28. Pac Symp Biocomput. 2016. PMID: 26776205 Free article.

3

BFDCA: A Comprehensive Tool of Using Bayes Factor for Differential Co-Expression Analysis.

Wang D, Wang J, Jiang Y, Liang Y, Xu D. Wang D, et al. Among authors: xu d. J Mol Biol. 2017 Feb 3;429(3):446-453. doi: 10.1016/j.jmb.2016.10.030. Epub 2016 Oct 27. J Mol Biol. 2017. PMID: 27984044 Free PMC article.

4

MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction.

Wang D, Zeng S, Xu C, Qiu W, Liang Y, Joshi T, Xu D. Wang D, et al. Among authors: xu c, xu d. Bioinformatics. 2017 Dec 15;33(24):3909-3916. doi: 10.1093/bioinformatics/btx496. Bioinformatics. 2017. PMID: 29036382 Free PMC article.

5

A Fast Projection-Based Algorithm for Clustering Big Data.

Wu Y, He Z, Lin H, Zheng Y, Zhang J, Xu D. Wu Y, et al. Among authors: xu d. Interdiscip Sci. 2019 Sep;11(3):360-366. doi: 10.1007/s12539-018-0294-3. Epub 2018 Jun 7. Interdiscip Sci. 2019. PMID: 29882026

6

Capsule network for protein post-translational modification site prediction.

Wang D, Liang Y, Xu D. Wang D, et al. Among authors: xu d. Bioinformatics. 2019 Jul 15;35(14):2386-2394. doi: 10.1093/bioinformatics/bty977. Bioinformatics. 2019. PMID: 30520972 Free PMC article.

7

DeepDom: Predicting protein domain boundary from sequence alone using stacked bidirectional LSTM.

Jiang Y, Wang D, Xu D. Jiang Y, et al. Among authors: xu d. Pac Symp Biocomput. 2019;24:66-75. Pac Symp Biocomput. 2019. PMID: 30864311 Free PMC article.

8

A rectified factor network based biclustering method for detecting cancer-related coding genes and miRNAs, and their interactions.

Su L, Liu G, Wang J, Xu D. Su L, et al. Among authors: xu d. Methods. 2019 Aug 15;166:22-30. doi: 10.1016/j.ymeth.2019.05.010. Epub 2019 May 21. Methods. 2019. PMID: 31121299 Free PMC article.

9

A dynamic programing approach to integrate gene expression data and network information for pathway model generation.

Jiang Y, Liang Y, Wang D, Xu D, Joshi T. Jiang Y, et al. Among authors: xu d. Bioinformatics. 2020 Jan 1;36(1):169-176. doi: 10.1093/bioinformatics/btz467. Bioinformatics. 2020. PMID: 31168616

10

IMPRes-Pro: A high dimensional multiomics integration method for in silico hypothesis generation.

Jiang Y, Wang D, Xu D, Joshi T. Jiang Y, et al. Among authors: xu d. Methods. 2020 Feb 15;173:16-23. doi: 10.1016/j.ymeth.2019.06.013. Epub 2019 Jun 17. Methods. 2020. PMID: 31220603

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