Bocci F - Search Results

1

Inference of Intercellular Communications and Multilayer Gene-Regulations of Epithelial-Mesenchymal Transition From Single-Cell Transcriptomic Data.

Sha Y, Wang S, Bocci F, Zhou P, Nie Q. Sha Y, et al. Among authors: bocci f. Front Genet. 2021 Jan 8;11:604585. doi: 10.3389/fgene.2020.604585. eCollection 2020. Front Genet. 2021. PMID: 33488673 Free PMC article.

2

Single-Cell RNA-Seq Analysis Reveals the Acquisition of Cancer Stem Cell Traits and Increase of Cell-Cell Signaling during EMT Progression.

Bocci F, Zhou P, Nie Q. Bocci F, et al. Cancers (Basel). 2021 Nov 16;13(22):5726. doi: 10.3390/cancers13225726. Cancers (Basel). 2021. PMID: 34830900 Free PMC article.

3

spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data.

Bocci F, Zhou P, Nie Q. Bocci F, et al. Mol Syst Biol. 2022 Nov;18(11):e11176. doi: 10.15252/msb.202211176. Mol Syst Biol. 2022. PMID: 36321549 Free PMC article.

4

Theoretical and computational tools to model multistable gene regulatory networks.

Bocci F, Jia D, Nie Q, Jolly MK, Onuchic J. Bocci F, et al. ArXiv [Preprint]. 2023 Jun 26:arXiv:2302.07401v2. ArXiv. 2023. Update in: Rep Prog Phys. 2023 Aug 22;86(10). doi: 10.1088/1361-6633/acec88 PMID: 36824430 Free PMC article. Updated. Preprint.

5

Theoretical and computational tools to model multistable gene regulatory networks.

Bocci F, Jia D, Nie Q, Jolly MK, Onuchic J. Bocci F, et al. Rep Prog Phys. 2023 Aug 22;86(10):10.1088/1361-6633/acec88. doi: 10.1088/1361-6633/acec88. Rep Prog Phys. 2023. PMID: 37531952 Free PMC article. Review.

6

Spatial-temporal order-disorder transition in angiogenic NOTCH signaling controls cell fate specification.

Kang TY, Bocci F, Nie Q, Onuchic JN, Levchenko A. Kang TY, et al. Among authors: bocci f. Elife. 2024 Feb 20;12:RP89262. doi: 10.7554/eLife.89262. Elife. 2024. PMID: 38376371 Free PMC article.

7

Editorial: Epithelial to Mesenchymal Plasticity in Colorectal Cancer.

Bocci F, Schneider-Stock R, Banerjee S. Bocci F, et al. Front Cell Dev Biol. 2022 Jun 23;10:950980. doi: 10.3389/fcell.2022.950980. eCollection 2022. Front Cell Dev Biol. 2022. PMID: 35813213 Free PMC article. No abstract available.

8

Coupled Feedback Loops Involving PAGE4, EMT and Notch Signaling Can Give Rise to Non-genetic Heterogeneity in Prostate Cancer Cells.

Singh D, Bocci F, Kulkarni P, Jolly MK. Singh D, et al. Among authors: bocci f. Entropy (Basel). 2021 Feb 26;23(3):288. doi: 10.3390/e23030288. Entropy (Basel). 2021. PMID: 33652914 Free PMC article.

9

Nrf2 Modulates the Hybrid Epithelial/Mesenchymal Phenotype and Notch Signaling During Collective Cancer Migration.

Vilchez Mercedes SA, Bocci F, Ahmed M, Eder I, Zhu N, Levine H, Onuchic JN, Jolly MK, Wong PK. Vilchez Mercedes SA, et al. Among authors: bocci f. Front Mol Biosci. 2022 Apr 8;9:807324. doi: 10.3389/fmolb.2022.807324. eCollection 2022. Front Mol Biosci. 2022. PMID: 35480877 Free PMC article.

10

Stochastic fluctuations promote ordered pattern formation of cells in the Notch-Delta signaling pathway.

Galbraith M, Bocci F, Onuchic JN. Galbraith M, et al. Among authors: bocci f. PLoS Comput Biol. 2022 Jul 21;18(7):e1010306. doi: 10.1371/journal.pcbi.1010306. eCollection 2022 Jul. PLoS Comput Biol. 2022. PMID: 35862460 Free PMC article.

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