Liu Z - Search Results

1

Deep forest ensemble learning for classification of alignments of non-coding RNA sequences based on multi-view structure representations.

Li Y, Zhang Q, Liu Z, Wang C, Han S, Ma Q, Du W. Li Y, et al. Among authors: liu z. Brief Bioinform. 2021 Jul 20;22(4):bbaa354. doi: 10.1093/bib/bbaa354. Brief Bioinform. 2021. PMID: 33367506 Free PMC article.

2

Network analyses in microbiome based on high-throughput multi-omics data.

Liu Z, Ma A, Mathé E, Merling M, Ma Q, Liu B. Liu Z, et al. Among authors: liu b. Brief Bioinform. 2021 Mar 22;22(2):1639-1655. doi: 10.1093/bib/bbaa005. Brief Bioinform. 2021. PMID: 32047891 Free PMC article. Review.

3

CirRNAPL: A web server for the identification of circRNA based on extreme learning machine.

Niu M, Zhang J, Li Y, Wang C, Liu Z, Ding H, Zou Q, Ma Q. Niu M, et al. Among authors: liu z. Comput Struct Biotechnol J. 2020 Apr 2;18:834-842. doi: 10.1016/j.csbj.2020.03.028. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32308930 Free PMC article.

4

The functional determinants in the organization of bacterial genomes.

Liu Z, Feng J, Yu B, Ma Q, Liu B. Liu Z, et al. Among authors: liu b. Brief Bioinform. 2021 May 20;22(3):bbaa172. doi: 10.1093/bib/bbaa172. Brief Bioinform. 2021. PMID: 32793986 Review.

5

De novo Prediction of Moonlighting Proteins Using Multimodal Deep Ensemble Learning.

Li Y, Zhao J, Liu Z, Wang C, Wei L, Han S, Du W. Li Y, et al. Among authors: liu z. Front Genet. 2021 Mar 22;12:630379. doi: 10.3389/fgene.2021.630379. eCollection 2021. Front Genet. 2021. PMID: 33828582 Free PMC article.

6

A novel computational framework for genome-scale alternative transcription units prediction.

Wang Q, Liu Z, Yan B, Chou WC, Ettwiller L, Ma Q, Liu B. Wang Q, et al. Among authors: liu z, liu b. Brief Bioinform. 2021 Nov 5;22(6):bbab162. doi: 10.1093/bib/bbab162. Brief Bioinform. 2021. PMID: 33957668

7

Computational methods and challenges in analyzing intratumoral microbiome data.

Wang Q, Liu Z, Ma A, Li Z, Liu B, Ma Q. Wang Q, et al. Among authors: liu z, liu b. Trends Microbiol. 2023 Jul;31(7):707-722. doi: 10.1016/j.tim.2023.01.011. Epub 2023 Feb 23. Trends Microbiol. 2023. PMID: 36841736 Free PMC article. Review.

8

Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data.

Liu Z, Wang Q, Ma A, Feng S, Chung D, Zhao J, Ma Q, Liu B. Liu Z, et al. Among authors: liu b. Comput Biol Med. 2023 Oct;165:107458. doi: 10.1016/j.compbiomed.2023.107458. Epub 2023 Sep 6. Comput Biol Med. 2023. PMID: 37703713

9

An Explainable Graph Neural Framework to Identify Cancer-Associated Intratumoral Microbial Communities.

Liu Z, Sun Y, Li Y, Ma A, Willaims NF, Jahanbahkshi S, Hoyd R, Wang X, Zhang S, Zhu J, Xu D, Spakowicz D, Ma Q, Liu B. Liu Z, et al. Among authors: liu b. Adv Sci (Weinh). 2024 Nov;11(41):e2403393. doi: 10.1002/advs.202403393. Epub 2024 Sep 3. Adv Sci (Weinh). 2024. PMID: 39225619 Free PMC article.

10

Reducing false positive rate of docking-based virtual screening by active learning.

Wang L, Shi SH, Li H, Zeng XX, Liu SY, Liu ZQ, Deng YF, Lu AP, Hou TJ, Cao DS. Wang L, et al. Brief Bioinform. 2023 Jan 19;24(1):bbac626. doi: 10.1093/bib/bbac626. Brief Bioinform. 2023. PMID: 36642412

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