Hölzer M - Search Results

1

RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow.

Lataretu M, Hölzer M. Lataretu M, et al. Among authors: holzer m. Genes (Basel). 2020 Dec 10;11(12):1487. doi: 10.3390/genes11121487. Genes (Basel). 2020. PMID: 33322033 Free PMC article.

2

A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes.

Mostajo NF, Lataretu M, Krautwurst S, Mock F, Desirò D, Lamkiewicz K, Collatz M, Schoen A, Weber F, Marz M, Hölzer M. Mostajo NF, et al. Among authors: holzer m. NAR Genom Bioinform. 2020 Mar;2(1):lqz006. doi: 10.1093/nargab/lqz006. Epub 2019 Sep 30. NAR Genom Bioinform. 2020. PMID: 32289119 Free PMC article.

3

Comparative Genome Analysis of 33 Chlamydia Strains Reveals Characteristic Features of Chlamydia Psittaci and Closely Related Species.

Hölzer M, Barf LM, Lamkiewicz K, Vorimore F, Lataretu M, Favaroni A, Schnee C, Laroucau K, Marz M, Sachse K. Hölzer M, et al. Pathogens. 2020 Oct 28;9(11):899. doi: 10.3390/pathogens9110899. Pathogens. 2020. PMID: 33126635 Free PMC article.

4

PoSeiDon: a Nextflow pipeline for the detection of evolutionary recombination events and positive selection.

Hölzer M, Marz M. Hölzer M, et al. Bioinformatics. 2021 May 17;37(7):1018-1020. doi: 10.1093/bioinformatics/btaa695. Bioinformatics. 2021. PMID: 32735310

5

Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN).

Van Damme R, Hölzer M, Viehweger A, Müller B, Bongcam-Rudloff E, Brandt C. Van Damme R, et al. Among authors: holzer m. PLoS Comput Biol. 2021 Feb 9;17(2):e1008716. doi: 10.1371/journal.pcbi.1008716. eCollection 2021 Feb. PLoS Comput Biol. 2021. PMID: 33561126 Free PMC article.

6

De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers.

Hölzer M, Marz M. Hölzer M, et al. Gigascience. 2019 May 1;8(5):giz039. doi: 10.1093/gigascience/giz039. Gigascience. 2019. PMID: 31077315 Free PMC article.

7

A decade of de novo transcriptome assembly: Are we there yet?

Hölzer M. Hölzer M. Mol Ecol Resour. 2021 Jan;21(1):11-13. doi: 10.1111/1755-0998.13268. Epub 2020 Oct 29. Mol Ecol Resour. 2021. PMID: 33030794

8

Evaluation of associations between genotypes of Mycobacterium avium subsp. paratuberculsis and presence of intestinal lesions characteristic of paratuberculosis.

Möbius P, Liebler-Tenorio E, Hölzer M, Köhler H. Möbius P, et al. Among authors: holzer m. Vet Microbiol. 2017 Mar;201:188-194. doi: 10.1016/j.vetmic.2017.01.026. Epub 2017 Jan 22. Vet Microbiol. 2017. PMID: 28284609

9

Differential Transcriptional Responses of Human Granulocytes to Fungal Infection with Candida albicans and Aspergillus fumigatus.

Klassert TE, Hölzer M, Zubiria-Barrera C, Bethge J, Klaile E, Müller MM, Marz M, Slevogt H. Klassert TE, et al. Among authors: holzer m. J Fungi (Basel). 2023 Oct 14;9(10):1014. doi: 10.3390/jof9101014. J Fungi (Basel). 2023. PMID: 37888270 Free PMC article.

10

Comparative transcriptomics identifies candidate genes involved in the evolutionary transition from dehiscent to indehiscent fruits in Lepidium (Brassicaceae).

Gramzow L, Klupsch K, Fernández-Pozo N, Hölzer M, Marz M, Rensing SA, Theißen G. Gramzow L, et al. Among authors: holzer m. BMC Plant Biol. 2022 Jul 14;22(1):340. doi: 10.1186/s12870-022-03631-8. BMC Plant Biol. 2022. PMID: 35836106 Free PMC article.

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