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Cluster-efficient pangenome graph construction with nf-core/pangenome.
Heumos S, Heuer ML, Hanssen F, Heumos L, Guarracino A, Heringer P, Ehmele P, Prins P, Garrison E, Nahnsen S. Heumos S, et al. Among authors: ehmele p. Bioinformatics. 2024 Nov 1;40(11):btae609. doi: 10.1093/bioinformatics/btae609. Bioinformatics. 2024. PMID: 39400346 Free PMC article.
An open-source framework for end-to-end analysis of electronic health record data.
Heumos L, Ehmele P, Treis T, Upmeier Zu Belzen J, Roellin E, May L, Namsaraeva A, Horlava N, Shitov VA, Zhang X, Zappia L, Knoll R, Lang NJ, Hetzel L, Virshup I, Sikkema L, Curion F, Eils R, Schiller HB, Hilgendorff A, Theis FJ. Heumos L, et al. Among authors: ehmele p. Nat Med. 2024 Nov;30(11):3369-3380. doi: 10.1038/s41591-024-03214-0. Epub 2024 Sep 12. Nat Med. 2024. PMID: 39266748 Free PMC article.
mlf-core: a framework for deterministic machine learning.
Heumos L, Ehmele P, Kuhn Cuellar L, Menden K, Miller E, Lemke S, Gabernet G, Nahnsen S. Heumos L, et al. Among authors: ehmele p. Bioinformatics. 2023 Apr 3;39(4):btad164. doi: 10.1093/bioinformatics/btad164. Bioinformatics. 2023. PMID: 37004171 Free PMC article.