Andrews TS - Search Results

1

Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data.

Andrews TS, Kiselev VY, McCarthy D, Hemberg M. Andrews TS, et al. Nat Protoc. 2021 Jan;16(1):1-9. doi: 10.1038/s41596-020-00409-w. Epub 2020 Dec 7. Nat Protoc. 2021. PMID: 33288955 Review.

2

SC3: consensus clustering of single-cell RNA-seq data.

Kiselev VY, Kirschner K, Schaub MT, Andrews T, Yiu A, Chandra T, Natarajan KN, Reik W, Barahona M, Green AR, Hemberg M. Kiselev VY, et al. Nat Methods. 2017 May;14(5):483-486. doi: 10.1038/nmeth.4236. Epub 2017 Mar 27. Nat Methods. 2017. PMID: 28346451 Free PMC article.

3

M3Drop: dropout-based feature selection for scRNASeq.

Andrews TS, Hemberg M. Andrews TS, et al. Bioinformatics. 2019 Aug 15;35(16):2865-2867. doi: 10.1093/bioinformatics/bty1044. Bioinformatics. 2019. PMID: 30590489 Free PMC article.

4

Challenges in unsupervised clustering of single-cell RNA-seq data.

Kiselev VY, Andrews TS, Hemberg M. Kiselev VY, et al. Among authors: andrews ts. Nat Rev Genet. 2019 May;20(5):273-282. doi: 10.1038/s41576-018-0088-9. Nat Rev Genet. 2019. PMID: 30617341 Review.

5

Publisher Correction: Challenges in unsupervised clustering of single-cell RNA-seq data.

Kiselev VY, Andrews TS, Hemberg M. Kiselev VY, et al. Among authors: andrews ts. Nat Rev Genet. 2019 May;20(5):310. doi: 10.1038/s41576-019-0095-5. Nat Rev Genet. 2019. PMID: 30670832

6

Identifying cell populations with scRNASeq.

Andrews TS, Hemberg M. Andrews TS, et al. Mol Aspects Med. 2018 Feb;59:114-122. doi: 10.1016/j.mam.2017.07.002. Epub 2017 Jul 25. Mol Aspects Med. 2018. PMID: 28712804 Free article. Review.

7

Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis.

Bergiers I, Andrews T, Vargel Bölükbaşı Ö, Buness A, Janosz E, Lopez-Anguita N, Ganter K, Kosim K, Celen C, Itır Perçin G, Collier P, Baying B, Benes V, Hemberg M, Lancrin C. Bergiers I, et al. Elife. 2018 Mar 20;7:e29312. doi: 10.7554/eLife.29312. Elife. 2018. PMID: 29555020 Free PMC article.

8

False signals induced by single-cell imputation.

Andrews TS, Hemberg M. Andrews TS, et al. F1000Res. 2018 Nov 2;7:1740. doi: 10.12688/f1000research.16613.2. eCollection 2018. F1000Res. 2018. PMID: 30906525 Free PMC article.

9

The Malaria Cell Atlas: Single parasite transcriptomes across the complete Plasmodium life cycle.

Howick VM, Russell AJC, Andrews T, Heaton H, Reid AJ, Natarajan K, Butungi H, Metcalf T, Verzier LH, Rayner JC, Berriman M, Herren JK, Billker O, Hemberg M, Talman AM, Lawniczak MKN. Howick VM, et al. Science. 2019 Aug 23;365(6455):eaaw2619. doi: 10.1126/science.aaw2619. Science. 2019. PMID: 31439762 Free PMC article.

10

Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods.

Clarke ZA, Andrews TS, Atif J, Pouyabahar D, Innes BT, MacParland SA, Bader GD. Clarke ZA, et al. Among authors: andrews ts. Nat Protoc. 2021 Jun;16(6):2749-2764. doi: 10.1038/s41596-021-00534-0. Epub 2021 May 24. Nat Protoc. 2021. PMID: 34031612 Review.

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