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Timing the SARS-CoV-2 index case in Hubei province.
Pekar J, Worobey M, Moshiri N, Scheffler K, Wertheim JO. Pekar J, et al. Among authors: scheffler k. Science. 2021 Apr 23;372(6540):412-417. doi: 10.1126/science.abf8003. Epub 2021 Mar 18. Science. 2021. PMID: 33737402 Free PMC article.
Evolutionary origins of human herpes simplex viruses 1 and 2.
Wertheim JO, Smith MD, Smith DM, Scheffler K, Kosakovsky Pond SL. Wertheim JO, et al. Among authors: scheffler k. Mol Biol Evol. 2014 Sep;31(9):2356-64. doi: 10.1093/molbev/msu185. Epub 2014 Jun 10. Mol Biol Evol. 2014. PMID: 24916030 Free PMC article.
RELAX: detecting relaxed selection in a phylogenetic framework.
Wertheim JO, Murrell B, Smith MD, Kosakovsky Pond SL, Scheffler K. Wertheim JO, et al. Among authors: scheffler k. Mol Biol Evol. 2015 Mar;32(3):820-32. doi: 10.1093/molbev/msu400. Epub 2014 Dec 23. Mol Biol Evol. 2015. PMID: 25540451 Free PMC article.
Gene-wide identification of episodic selection.
Murrell B, Weaver S, Smith MD, Wertheim JO, Murrell S, Aylward A, Eren K, Pollner T, Martin DP, Smith DM, Scheffler K, Kosakovsky Pond SL. Murrell B, et al. Among authors: scheffler k. Mol Biol Evol. 2015 May;32(5):1365-71. doi: 10.1093/molbev/msv035. Epub 2015 Feb 19. Mol Biol Evol. 2015. PMID: 25701167 Free PMC article.
Using HIV Sequence and Epidemiologic Data to Assess the Effect of Self-referral Testing for Acute HIV Infection on Incident Diagnoses in San Diego, California.
Mehta SR, Murrell B, Anderson CM, Kosakovsky Pond SL, Wertheim JO, Young JA, Freitas L, Richman DD, Mathews WC, Scheffler K, Little SJ, Smith DM. Mehta SR, et al. Among authors: scheffler k. Clin Infect Dis. 2016 Jul 1;63(1):101-107. doi: 10.1093/cid/ciw161. Epub 2016 May 11. Clin Infect Dis. 2016. PMID: 27174704 Free PMC article.
Social and Genetic Networks of HIV-1 Transmission in New York City.
Wertheim JO, Kosakovsky Pond SL, Forgione LA, Mehta SR, Murrell B, Shah S, Smith DM, Scheffler K, Torian LV. Wertheim JO, et al. Among authors: scheffler k. PLoS Pathog. 2017 Jan 9;13(1):e1006000. doi: 10.1371/journal.ppat.1006000. eCollection 2017 Jan. PLoS Pathog. 2017. PMID: 28068413 Free PMC article.
A molecular transmission network of recent hepatitis C infection in people with and without HIV: Implications for targeted treatment strategies.
Bartlett SR, Wertheim JO, Bull RA, Matthews GV, Lamoury FM, Scheffler K, Hellard M, Maher L, Dore GJ, Lloyd AR, Applegate TL, Grebely J. Bartlett SR, et al. Among authors: scheffler k. J Viral Hepat. 2017 May;24(5):404-411. doi: 10.1111/jvh.12652. Epub 2016 Nov 24. J Viral Hepat. 2017. PMID: 27882678 Free PMC article.
Detecting individual sites subject to episodic diversifying selection.
Murrell B, Wertheim JO, Moola S, Weighill T, Scheffler K, Kosakovsky Pond SL. Murrell B, et al. Among authors: scheffler k. PLoS Genet. 2012;8(7):e1002764. doi: 10.1371/journal.pgen.1002764. Epub 2012 Jul 12. PLoS Genet. 2012. PMID: 22807683 Free PMC article.
542 results