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Massively multiplex single-molecule oligonucleosome footprinting.
Abdulhay NJ, McNally CP, Hsieh LJ, Kasinathan S, Keith A, Estes LS, Karimzadeh M, Underwood JG, Goodarzi H, Narlikar GJ, Ramani V. Abdulhay NJ, et al. Among authors: ramani v. Elife. 2020 Dec 2;9:e59404. doi: 10.7554/eLife.59404. Elife. 2020. PMID: 33263279 Free PMC article.
Massively multiplex chemical transcriptomics at single-cell resolution.
Srivatsan SR, McFaline-Figueroa JL, Ramani V, Saunders L, Cao J, Packer J, Pliner HA, Jackson DL, Daza RM, Christiansen L, Zhang F, Steemers F, Shendure J, Trapnell C. Srivatsan SR, et al. Among authors: ramani v. Science. 2020 Jan 3;367(6473):45-51. doi: 10.1126/science.aax6234. Epub 2019 Dec 5. Science. 2020. PMID: 31806696 Free PMC article.
Nucleosome density shapes kilobase-scale regulation by a mammalian chromatin remodeler.
Abdulhay NJ, Hsieh LJ, McNally CP, Ostrowski MS, Moore CM, Ketavarapu M, Kasinathan S, Nanda AS, Wu K, Chio US, Zhou Z, Goodarzi H, Narlikar GJ, Ramani V. Abdulhay NJ, et al. Among authors: ramani v. Nat Struct Mol Biol. 2023 Oct;30(10):1571-1581. doi: 10.1038/s41594-023-01093-6. Epub 2023 Sep 11. Nat Struct Mol Biol. 2023. PMID: 37696956 Free PMC article.
Direct transposition of native DNA for sensitive multimodal single-molecule sequencing.
Nanda AS, Wu K, Irkliyenko I, Woo B, Ostrowski MS, Clugston AS, Sayles LC, Xu L, Satpathy AT, Nguyen HG, Alejandro Sweet-Cordero E, Goodarzi H, Kasinathan S, Ramani V. Nanda AS, et al. Among authors: ramani v. Nat Genet. 2024 Jun;56(6):1300-1309. doi: 10.1038/s41588-024-01748-0. Epub 2024 May 9. Nat Genet. 2024. PMID: 38724748 Free PMC article.
Massively multiplex single-cell Hi-C.
Ramani V, Deng X, Qiu R, Gunderson KL, Steemers FJ, Disteche CM, Noble WS, Duan Z, Shendure J. Ramani V, et al. Nat Methods. 2017 Mar;14(3):263-266. doi: 10.1038/nmeth.4155. Epub 2017 Jan 30. Nat Methods. 2017. PMID: 28135255 Free PMC article.
The glucose-sensing transcription factor MLX balances metabolism and stress to suppress apoptosis and maintain spermatogenesis.
Carroll PA, Freie BW, Cheng PF, Kasinathan S, Gu H, Hedrich T, Dowdle JA, Venkataramani V, Ramani V, Wu X, Raftery D, Shendure J, Ayer DE, Muller CH, Eisenman RN. Carroll PA, et al. Among authors: ramani v. PLoS Biol. 2021 Oct 20;19(10):e3001085. doi: 10.1371/journal.pbio.3001085. eCollection 2021 Oct. PLoS Biol. 2021. PMID: 34669700 Free PMC article.
188 results