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FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.
Abugessaisa I, Ramilowski JA, Lizio M, Severin J, Hasegawa A, Harshbarger J, Kondo A, Noguchi S, Yip CW, Ooi JLC, Tagami M, Hori F, Agrawal S, Hon CC, Cardon M, Ikeda S, Ono H, Bono H, Kato M, Hashimoto K, Bonetti A, Kato M, Kobayashi N, Shin J, de Hoon M, Hayashizaki Y, Carninci P, Kawaji H, Kasukawa T. Abugessaisa I, et al. Among authors: kondo a. Nucleic Acids Res. 2021 Jan 8;49(D1):D892-D898. doi: 10.1093/nar/gkaa1054. Nucleic Acids Res. 2021. PMID: 33211864 Free PMC article.
FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki.
Abugessaisa I, Shimoji H, Sahin S, Kondo A, Harshbarger J, Lizio M, Hayashizaki Y, Carninci P; FANTOM consortium; Forrest A, Kasukawa T, Kawaji H. Abugessaisa I, et al. Among authors: kondo a. Database (Oxford). 2016 Jul 9;2016:baw105. doi: 10.1093/database/baw105. Print 2016. Database (Oxford). 2016. PMID: 27402679 Free PMC article.
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.
Lizio M, Harshbarger J, Abugessaisa I, Noguchi S, Kondo A, Severin J, Mungall C, Arenillas D, Mathelier A, Medvedeva YA, Lennartsson A, Drabløs F, Ramilowski JA, Rackham O, Gough J, Andersson R, Sandelin A, Ienasescu H, Ono H, Bono H, Hayashizaki Y, Carninci P, Forrest AR, Kasukawa T, Kawaji H. Lizio M, et al. Among authors: kondo a. Nucleic Acids Res. 2017 Jan 4;45(D1):D737-D743. doi: 10.1093/nar/gkw995. Epub 2016 Oct 27. Nucleic Acids Res. 2017. PMID: 27794045 Free PMC article.
FANTOM5 CAGE profiles of human and mouse samples.
Noguchi S, Arakawa T, Fukuda S, Furuno M, Hasegawa A, Hori F, Ishikawa-Kato S, Kaida K, Kaiho A, Kanamori-Katayama M, Kawashima T, Kojima M, Kubosaki A, Manabe RI, Murata M, Nagao-Sato S, Nakazato K, Ninomiya N, Nishiyori-Sueki H, Noma S, Saijyo E, Saka A, Sakai M, Simon C, Suzuki N, Tagami M, Watanabe S, Yoshida S, Arner P, Axton RA, Babina M, Baillie JK, Barnett TC, Beckhouse AG, Blumenthal A, Bodega B, Bonetti A, Briggs J, Brombacher F, Carlisle AJ, Clevers HC, Davis CA, Detmar M, Dohi T, Edge ASB, Edinger M, Ehrlund A, Ekwall K, Endoh M, Enomoto H, Eslami A, Fagiolini M, Fairbairn L, Farach-Carson MC, Faulkner GJ, Ferrai C, Fisher ME, Forrester LM, Fujita R, Furusawa JI, Geijtenbeek TB, Gingeras T, Goldowitz D, Guhl S, Guler R, Gustincich S, Ha TJ, Hamaguchi M, Hara M, Hasegawa Y, Herlyn M, Heutink P, Hitchens KJ, Hume DA, Ikawa T, Ishizu Y, Kai C, Kawamoto H, Kawamura YI, Kempfle JS, Kenna TJ, Kere J, Khachigian LM, Kitamura T, Klein S, Klinken SP, Knox AJ, Kojima S, Koseki H, Koyasu S, Lee W, Lennartsson A, Mackay-Sim A, Mejhert N, Mizuno Y, Morikawa H, Morimoto M, Moro K, Morris KJ, Motohashi H, Mummery CL, Nakachi Y, Nakahara F, Nakamura T, Nakamura Y, Nozaki T, Ogishima S… See abstract for full author list ➔ Noguchi S, et al. Among authors: kondo n, kondo a. Sci Data. 2017 Aug 29;4:170112. doi: 10.1038/sdata.2017.112. Sci Data. 2017. PMID: 28850106 Free PMC article.
refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites.
Abugessaisa I, Noguchi S, Hasegawa A, Kondo A, Kawaji H, Carninci P, Kasukawa T. Abugessaisa I, et al. Among authors: kondo a. J Mol Biol. 2019 Jun 14;431(13):2407-2422. doi: 10.1016/j.jmb.2019.04.045. Epub 2019 May 8. J Mol Biol. 2019. PMID: 31075273 Free article.
Update of the FANTOM web resource: enhancement for studying noncoding genomes.
Nobusada T, Yip CW, Agrawal S, Severin J, Abugessaisa I, Hasegawa A, Hon CC, Ide S, Koido M, Kondo A, Masuya H, Oki S, Tagami M, Takada T, Terao C, Thalhath N, Walker S, Yasuzawa K, Shin JW, de Hoon MJL, Carninci P, Kawaji H, Kasukawa T. Nobusada T, et al. Among authors: kondo a. Nucleic Acids Res. 2024 Nov 27:gkae1047. doi: 10.1093/nar/gkae1047. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39592010
Favorable seizure and developmental outcomes without preoperative intracranial electroencephalography in pediatric patients following epilepsy surgery: A single epilepsy center retrospective study.
Okumura T, Usui N, Kondo A, Ogawa H, Hashiguchi M, Kuromi Y, Yamaguchi T, Otani H, Imai K, Ishizaki T, Tanei T, Maesawa S, Saito R. Okumura T, et al. Among authors: kondo a. Epilepsia. 2024 Dec 27. doi: 10.1111/epi.18249. Online ahead of print. Epilepsia. 2024. PMID: 39729026
2,178 results