Di Felice R - Search Results

1

The RNA Polymerase α Subunit Recognizes the DNA Shape of the Upstream Promoter Element.

Lara-Gonzalez S, Dantas Machado AC, Rao S, Napoli AA, Birktoft J, Di Felice R, Rohs R, Lawson CL. Lara-Gonzalez S, et al. Among authors: di felice r. Biochemistry. 2020 Dec 8;59(48):4523-4532. doi: 10.1021/acs.biochem.0c00571. Epub 2020 Nov 18. Biochemistry. 2020. PMID: 33205945 Free PMC article.

2

Control of DNA minor groove width and Fis protein binding by the purine 2-amino group.

Hancock SP, Ghane T, Cascio D, Rohs R, Di Felice R, Johnson RC. Hancock SP, et al. Among authors: di felice r. Nucleic Acids Res. 2013 Jul;41(13):6750-60. doi: 10.1093/nar/gkt357. Epub 2013 May 9. Nucleic Acids Res. 2013. PMID: 23661683 Free PMC article.

3

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.

Zhou T, Yang L, Lu Y, Dror I, Dantas Machado AC, Ghane T, Di Felice R, Rohs R. Zhou T, et al. Among authors: di felice r. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W56-62. doi: 10.1093/nar/gkt437. Epub 2013 May 22. Nucleic Acids Res. 2013. PMID: 23703209 Free PMC article.

4

Conformations of Human Telomeric G-Quadruplex Studied Using a Nucleotide-Independent Nitroxide Label.

Zhang X, Xu CX, Di Felice R, Sponer J, Islam B, Stadlbauer P, Ding Y, Mao L, Mao ZW, Qin PZ. Zhang X, et al. Among authors: di felice r. Biochemistry. 2016 Jan 19;55(2):360-72. doi: 10.1021/acs.biochem.5b01189. Epub 2015 Dec 31. Biochemistry. 2016. PMID: 26678746 Free PMC article.

5

CRISPR-Cas9 Mediated DNA Unwinding Detected Using Site-Directed Spin Labeling.

Tangprasertchai NS, Di Felice R, Zhang X, Slaymaker IM, Vazquez Reyes C, Jiang W, Rohs R, Qin PZ. Tangprasertchai NS, et al. Among authors: di felice r. ACS Chem Biol. 2017 Jun 16;12(6):1489-1493. doi: 10.1021/acschembio.6b01137. Epub 2017 May 3. ACS Chem Biol. 2017. PMID: 28437608 Free PMC article.

6

Quantum annealing versus classical machine learning applied to a simplified computational biology problem.

Li RY, Di Felice R, Rohs R, Lidar DA. Li RY, et al. Among authors: di felice r. npj Quantum Inf. 2018;4:14. doi: 10.1038/s41534-018-0060-8. Epub 2018 Feb 21. npj Quantum Inf. 2018. PMID: 29652405 Free PMC article.

7

Landscape of DNA binding signatures of myocyte enhancer factor-2B reveals a unique interplay of base and shape readout.

Dantas Machado AC, Cooper BH, Lei X, Di Felice R, Chen L, Rohs R. Dantas Machado AC, et al. Among authors: di felice r. Nucleic Acids Res. 2020 Sep 4;48(15):8529-8544. doi: 10.1093/nar/gkaa642. Nucleic Acids Res. 2020. PMID: 32738045 Free PMC article.

8

Optical properties of triplex DNA from time-dependent density functional theory.

Ghane T, Brancolini G, Varsano D, Di Felice R. Ghane T, et al. Among authors: di felice r. J Phys Chem B. 2012 Sep 6;116(35):10693-702. doi: 10.1021/jp304818s. Epub 2012 Aug 22. J Phys Chem B. 2012. PMID: 22866829

9

The structure of neuronal calcium sensor-1 in solution revealed by molecular dynamics simulations.

Bellucci L, Corni S, Di Felice R, Paci E. Bellucci L, et al. Among authors: di felice r. PLoS One. 2013 Sep 30;8(9):e74383. doi: 10.1371/journal.pone.0074383. eCollection 2013. PLoS One. 2013. PMID: 24098643 Free PMC article.

10

The impact of G-quadruplex dynamics on inter-tetrad electronic couplings: a hybrid computational study.

Nandi S, Coane C, Villegas AE, Ray A, Di Felice R. Nandi S, et al. Among authors: di felice r. Phys Chem Chem Phys. 2022 Sep 28;24(37):22513-22522. doi: 10.1039/d2cp03505g. Phys Chem Chem Phys. 2022. PMID: 36106845

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