Pederson S - Search Results

1

Differential allelic representation (DAR) identifies candidate eQTLs and improves transcriptome analysis.

Baer L, Barthelson K, Postlethwait JH, Adelson DL, Pederson SM, Lardelli M. Baer L, et al. Among authors: pederson sm. PLoS Comput Biol. 2024 Feb 12;20(2):e1011868. doi: 10.1371/journal.pcbi.1011868. eCollection 2024 Feb. PLoS Comput Biol. 2024. PMID: 38346074 Free PMC article.

2

The androgen receptor interacts with GATA3 to transcriptionally regulate a luminal epithelial cell phenotype in breast cancer.

Hosseinzadeh L, Kikhtyak Z, Laven-Law G, Pederson SM, Puiu CG, D'Santos CS, Lim E, Carroll JS, Tilley WD, Dwyer AR, Hickey TE. Hosseinzadeh L, et al. Among authors: pederson sm. Genome Biol. 2024 Feb 5;25(1):44. doi: 10.1186/s13059-023-03161-y. Genome Biol. 2024. PMID: 38317241 Free PMC article.

3

Unbiased gene expression analysis of the delayed fracture healing observed in Zucker diabetic fatty rats.

Sung J, Barratt KR, Pederson SM, Chenu C, Reichert I, Atkins GJ, Anderson PH, Smitham PJ. Sung J, et al. Among authors: pederson sm. Bone Joint Res. 2023 Oct 17;12(10):657-666. doi: 10.1302/2046-3758.1210.BJR-2023-0062.R1. Bone Joint Res. 2023. PMID: 37844909 Free PMC article.

4

The Use of Zebrafish in Transcriptome Analysis of the Early Effects of Mutations Causing Early Onset Familial Alzheimer's Disease and Other Inherited Neurodegenerative Conditions.

Lardelli M, Baer L, Hin N, Allen A, Pederson SM, Barthelson K. Lardelli M, et al. Among authors: pederson sm. J Alzheimers Dis. 2024;99(s2):S367-S381. doi: 10.3233/JAD-230522. J Alzheimers Dis. 2024. PMID: 37742650

5

Study protocol paper for the multi-site feasibility evaluation of mobile and technology-assisted aftercare services for crisis stabilization units.

Pettus C, Fulmer R, Pederson SD, Eikenberry J. Pettus C, et al. Among authors: pederson sd. Pilot Feasibility Stud. 2023 Jul 31;9(1):135. doi: 10.1186/s40814-023-01361-8. Pilot Feasibility Stud. 2023. PMID: 37525253 Free PMC article.

6

Determination of Tr1 cell populations correlating with distinct activation states in acute IAV infection.

Abbott CA, Freimayer EL, Tyllis TS, Norton TS, Alsharifi M, Heng AHS, Pederson SM, Qu Z, Armstrong M, Hill GR, McColl SR, Comerford I. Abbott CA, et al. Among authors: pederson sm. Mucosal Immunol. 2023 Oct;16(5):606-623. doi: 10.1016/j.mucimm.2023.06.003. Epub 2023 Jun 14. Mucosal Immunol. 2023. PMID: 37321403 Free article.

7

Parallel recovery of chromatin accessibility and gene expression dynamics from frozen human regulatory T cells.

Wong YY, Harbison JE, Hope CM, Gundsambuu B, Brown KA, Wong SW, Brown CY, Couper JJ, Breen J, Liu N, Pederson SM, Köhne M, Klee K, Schultze J, Beyer M, Sadlon T, Barry SC. Wong YY, et al. Among authors: pederson sm. Sci Rep. 2023 Apr 4;13(1):5506. doi: 10.1038/s41598-023-32256-6. Sci Rep. 2023. PMID: 37016052 Free PMC article.

8

Differential allelic representation (DAR) identifies candidate eQTLs and improves transcriptome analysis.

Baer L, Barthelson K, Postlethwait J, Adelson D, Pederson S, Lardelli M. Baer L, et al. Among authors: pederson s. bioRxiv [Preprint]. 2023 Mar 21:2023.03.02.530865. doi: 10.1101/2023.03.02.530865. bioRxiv. 2023. Update in: PLoS Comput Biol. 2024 Feb 12;20(2):e1011868. doi: 10.1371/journal.pcbi.1011868 PMID: 36945478 Free PMC article. Updated. Preprint.

9

Varied Patterns of Decay of Intact Human Immunodeficiency Virus Type 1 Proviruses Over 2 Decades of Antiretroviral Therapy.

Gandhi RT, Bosch RJ, Mar H, Laird GM, Halvas EK, Hovind L, Collier AC, Riddler SA, Martin A, Ritter K, McMahon DK, Eron JJ, Cyktor JC, Mellors JW; AIDS Clinical Trials Group A5321 Team. Gandhi RT, et al. J Infect Dis. 2023 Jun 15;227(12):1376-1380. doi: 10.1093/infdis/jiad039. J Infect Dis. 2023. PMID: 36763044 Free PMC article.

10

Transient Polycomb activity represses developmental genes in growing oocytes.

Jarred EG, Qu Z, Tsai T, Oberin R, Petautschnig S, Bildsoe H, Pederson S, Zhang QH, Stringer JM, Carroll J, Gardner DK, Van den Buuse M, Sims NA, Gibson WT, Adelson DL, Western PS. Jarred EG, et al. Among authors: pederson s. Clin Epigenetics. 2022 Dec 21;14(1):183. doi: 10.1186/s13148-022-01400-w. Clin Epigenetics. 2022. PMID: 36544159 Free PMC article.

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