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The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.
Bastian FB, Roux J, Niknejad A, Comte A, Fonseca Costa SS, de Farias TM, Moretti S, Parmentier G, de Laval VR, Rosikiewicz M, Wollbrett J, Echchiki A, Escoriza A, Gharib WH, Gonzales-Porta M, Jarosz Y, Laurenczy B, Moret P, Person E, Roelli P, Sanjeev K, Seppey M, Robinson-Rechavi M. Bastian FB, et al. Among authors: echchiki a. Nucleic Acids Res. 2021 Jan 8;49(D1):D831-D847. doi: 10.1093/nar/gkaa793. Nucleic Acids Res. 2021. PMID: 33037820 Free PMC article.
Evaluation of tools for long read RNA-seq splice-aware alignment.
Križanovic K, Echchiki A, Roux J, Šikic M. Križanovic K, et al. Among authors: echchiki a. Bioinformatics. 2018 Mar 1;34(5):748-754. doi: 10.1093/bioinformatics/btx668. Bioinformatics. 2018. PMID: 29069314 Free PMC article.
Parallel evolution of amphioxus and vertebrate small-scale gene duplications.
Brasó-Vives M, Marlétaz F, Echchiki A, Mantica F, Acemel RD, Gómez-Skarmeta JL, Hartasánchez DA, Le Targa L, Pontarotti P, Tena JJ, Maeso I, Escriva H, Irimia M, Robinson-Rechavi M. Brasó-Vives M, et al. Among authors: echchiki a. Genome Biol. 2022 Nov 18;23(1):243. doi: 10.1186/s13059-022-02808-6. Genome Biol. 2022. PMID: 36401278 Free PMC article.