Polasky DA - Search Results

1

Fast and comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco.

Polasky DA, Yu F, Teo GC, Nesvizhskii AI. Polasky DA, et al. Nat Methods. 2020 Nov;17(11):1125-1132. doi: 10.1038/s41592-020-0967-9. Epub 2020 Oct 5. Nat Methods. 2020. PMID: 33020657 Free PMC article.

2

IMTBX and Grppr: Software for Top-Down Proteomics Utilizing Ion Mobility-Mass Spectrometry.

Avtonomov DM, Polasky DA, Ruotolo BT, Nesvizhskii AI. Avtonomov DM, et al. Among authors: polasky da. Anal Chem. 2018 Feb 6;90(3):2369-2375. doi: 10.1021/acs.analchem.7b04999. Epub 2018 Jan 16. Anal Chem. 2018. PMID: 29278491 Free PMC article.

3

Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant.

Yu F, Haynes SE, Teo GC, Avtonomov DM, Polasky DA, Nesvizhskii AI. Yu F, et al. Among authors: polasky da. Mol Cell Proteomics. 2020 Sep;19(9):1575-1585. doi: 10.1074/mcp.TIR120.002048. Epub 2020 Jul 2. Mol Cell Proteomics. 2020. PMID: 32616513 Free PMC article.

4

Fast Deisotoping Algorithm and Its Implementation in the MSFragger Search Engine.

Teo GC, Polasky DA, Yu F, Nesvizhskii AI. Teo GC, et al. Among authors: polasky da. J Proteome Res. 2021 Jan 1;20(1):498-505. doi: 10.1021/acs.jproteome.0c00544. Epub 2020 Dec 17. J Proteome Res. 2021. PMID: 33332123 Free PMC article.

5

Multiattribute Glycan Identification and FDR Control for Glycoproteomics.

Polasky DA, Geiszler DJ, Yu F, Nesvizhskii AI. Polasky DA, et al. Mol Cell Proteomics. 2022 Mar;21(3):100205. doi: 10.1016/j.mcpro.2022.100205. Epub 2022 Jan 26. Mol Cell Proteomics. 2022. PMID: 35091091 Free PMC article.

6

Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation.

Yan T, Palmer AB, Geiszler DJ, Polasky DA, Boatner LM, Burton NR, Armenta E, Nesvizhskii AI, Backus KM. Yan T, et al. Among authors: polasky da. Anal Chem. 2022 Mar 8;94(9):3800-3810. doi: 10.1021/acs.analchem.1c04402. Epub 2022 Feb 23. Anal Chem. 2022. PMID: 35195394

7

Recent advances in computational algorithms and software for large-scale glycoproteomics.

Polasky DA, Nesvizhskii AI. Polasky DA, et al. Curr Opin Chem Biol. 2023 Feb;72:102238. doi: 10.1016/j.cbpa.2022.102238. Epub 2022 Dec 14. Curr Opin Chem Biol. 2023. PMID: 36525809 Review.

8

MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics.

Polasky DA, Geiszler DJ, Yu F, Li K, Teo GC, Nesvizhskii AI. Polasky DA, et al. Mol Cell Proteomics. 2023 May;22(5):100538. doi: 10.1016/j.mcpro.2023.100538. Epub 2023 Mar 31. Mol Cell Proteomics. 2023. PMID: 37004988 Free PMC article.

9

Unraveling the glycosylated immunopeptidome with HLA-Glyco.

Bedran G, Polasky DA, Hsiao Y, Yu F, da Veiga Leprevost F, Alfaro JA, Cieslik M, Nesvizhskii AI. Bedran G, et al. Among authors: polasky da. Nat Commun. 2023 Jun 12;14(1):3461. doi: 10.1038/s41467-023-39270-2. Nat Commun. 2023. PMID: 37308510 Free PMC article.

10

Efficient Analysis of Proteome-wide FPOP Data by FragPipe.

Ramírez CR, Espino JA, Jones LM, Polasky DA, Nesvizhskii AI. Ramírez CR, et al. Among authors: polasky da. bioRxiv [Preprint]. 2023 Jun 5:2023.06.01.543263. doi: 10.1101/2023.06.01.543263. bioRxiv. 2023. Update in: Anal Chem. 2023 Nov 7;95(44):16131-16137. doi: 10.1021/acs.analchem.3c02388 PMID: 37333157 Free PMC article. Updated. Preprint.

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