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Network and Systems Medicine: Position Paper of the European Collaboration on Science and Technology Action on Open Multiscale Systems Medicine.
Comte B, Baumbach J, Benis A, Basílio J, Debeljak N, Flobak Å, Franken C, Harel N, He F, Kuiper M, Méndez Pérez JA, Pujos-Guillot E, Režen T, Rozman D, Schmid JA, Scerri J, Tieri P, Van Steen K, Vasudevan S, Watterson S, Schmidt HHHW. Comte B, et al. Among authors: tieri p. Netw Syst Med. 2020 Jul 6;3(1):67-90. doi: 10.1089/nsm.2020.0004. eCollection 2020. Netw Syst Med. 2020. PMID: 32954378 Free PMC article. Review.
Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine.
Zanin M, Chorbev I, Stres B, Stalidzans E, Vera J, Tieri P, Castiglione F, Groen D, Zheng H, Baumbach J, Schmid JA, Basilio J, Klimek P, Debeljak N, Rozman D, Schmidt HHHW. Zanin M, et al. Among authors: tieri p. Brief Bioinform. 2019 May 21;20(3):1057-1062. doi: 10.1093/bib/bbx160. Brief Bioinform. 2019. PMID: 29220509 Free PMC article. Review.
EpiGEN: an epistasis simulation pipeline.
Blumenthal DB, Viola L, List M, Baumbach J, Tieri P, Kacprowski T. Blumenthal DB, et al. Among authors: tieri p. Bioinformatics. 2020 Dec 8;36(19):4957-4959. doi: 10.1093/bioinformatics/btaa245. Bioinformatics. 2020. PMID: 32289146
Molecular networks in Network Medicine: Development and applications.
Silverman EK, Schmidt HHHW, Anastasiadou E, Altucci L, Angelini M, Badimon L, Balligand JL, Benincasa G, Capasso G, Conte F, Di Costanzo A, Farina L, Fiscon G, Gatto L, Gentili M, Loscalzo J, Marchese C, Napoli C, Paci P, Petti M, Quackenbush J, Tieri P, Viggiano D, Vilahur G, Glass K, Baumbach J. Silverman EK, et al. Among authors: tieri p. Wiley Interdiscip Rev Syst Biol Med. 2020 Nov;12(6):e1489. doi: 10.1002/wsbm.1489. Epub 2020 Apr 19. Wiley Interdiscip Rev Syst Biol Med. 2020. PMID: 32307915 Free PMC article. Review.
Deep learning in systems medicine.
Wang H, Pujos-Guillot E, Comte B, de Miranda JL, Spiwok V, Chorbev I, Castiglione F, Tieri P, Watterson S, McAllister R, de Melo Malaquias T, Zanin M, Rai TS, Zheng H. Wang H, et al. Among authors: tieri p. Brief Bioinform. 2021 Mar 22;22(2):1543-1559. doi: 10.1093/bib/bbaa237. Brief Bioinform. 2021. PMID: 33197934 Free PMC article. Review.
Joining European Scientific Forces to Face Pandemics.
Vasconcelos MH, Alcaro S, Arechavala-Gomeza V, Baumbach J, Borges F, Brevini TAL, Rivas JL, Devaux Y, Hozak P, Keinänen-Toivola MM, Lattanzi G, Mohr T, Murovska M, Prusty BK, Quinlan RA, Pérez-Sala D, Scheibenbogen C, Schmidt HHHW, Silveira I, Tieri P, Tolios A, Riganti C. Vasconcelos MH, et al. Among authors: tieri p. Trends Microbiol. 2021 Feb;29(2):92-97. doi: 10.1016/j.tim.2020.10.008. Epub 2020 Dec 4. Trends Microbiol. 2021. PMID: 33288385 Free PMC article.
BiCoN: network-constrained biclustering of patients and omics data.
Lazareva O, Canzar S, Yuan K, Baumbach J, Blumenthal DB, Tieri P, Kacprowski T, List M. Lazareva O, et al. Among authors: tieri p. Bioinformatics. 2021 Aug 25;37(16):2398-2404. doi: 10.1093/bioinformatics/btaa1076. Bioinformatics. 2021. PMID: 33367514
An Early Stage Researcher's Primer on Systems Medicine Terminology.
Zanin M, Aitya NAA, Basilio J, Baumbach J, Benis A, Behera CK, Bucholc M, Castiglione F, Chouvarda I, Comte B, Dao TT, Ding X, Pujos-Guillot E, Filipovic N, Finn DP, Glass DH, Harel N, Iesmantas T, Ivanoska I, Joshi A, Boudjeltia KZ, Kaoui B, Kaur D, Maguire LP, McClean PL, McCombe N, de Miranda JL, Moisescu MA, Pappalardo F, Polster A, Prasad G, Rozman D, Sacala I, Sanchez-Bornot JM, Schmid JA, Sharp T, Solé-Casals J, Spiwok V, Spyrou GM, Stalidzans E, Stres B, Sustersic T, Symeonidis I, Tieri P, Todd S, Van Steen K, Veneva M, Wang DH, Wang H, Wang H, Watterson S, Wong-Lin K, Yang S, Zou X, Schmidt HHHW. Zanin M, et al. Among authors: tieri p. Netw Syst Med. 2021 Feb 25;4(1):2-50. doi: 10.1089/nsm.2020.0003. eCollection 2021 Feb. Netw Syst Med. 2021. PMID: 33659919 Free PMC article. Review.
Flimma: a federated and privacy-aware tool for differential gene expression analysis.
Zolotareva O, Nasirigerdeh R, Matschinske J, Torkzadehmahani R, Bakhtiari M, Frisch T, Späth J, Blumenthal DB, Abbasinejad A, Tieri P, Kaissis G, Rückert D, Wenke NK, List M, Baumbach J. Zolotareva O, et al. Among authors: tieri p. Genome Biol. 2021 Dec 14;22(1):338. doi: 10.1186/s13059-021-02553-2. Genome Biol. 2021. PMID: 34906207 Free PMC article.
Multiscale modelling in immunology: a review.
Cappuccio A, Tieri P, Castiglione F. Cappuccio A, et al. Among authors: tieri p. Brief Bioinform. 2016 May;17(3):408-18. doi: 10.1093/bib/bbv012. Epub 2015 Mar 25. Brief Bioinform. 2016. PMID: 25810307 Review.
48 results