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Transcriptomic analysis of the human habenula in schizophrenia.
Yalcinbas EA, Ajanaku B, Nelson ED, Garcia-Flores R, Eagles NJ, Montgomery KD, Stolz JM, Wu J, Divecha HR, Chandra A, Bharadwaj RA, Bach S, Rajpurohit A, Tao R, Pertea G, Shin JH, Kleinman JE, Hyde TM, Weinberger DR, Huuki-Myers LA, Collado-Torres L, Maynard KR. Yalcinbas EA, et al. bioRxiv [Preprint]. 2024 Jul 17:2024.02.26.582081. doi: 10.1101/2024.02.26.582081. bioRxiv. 2024. PMID: 38463979 Free PMC article. Preprint.
Integrating gene expression and imaging data across Visium capture areas with visiumStitched.
Eagles NJ, Bach SV, Tippani M, Ravichandran P, Du Y, Miller RA, Hyde TM, Page SC, Martinowich K, Collado-Torres L. Eagles NJ, et al. Among authors: collado torres l. bioRxiv [Preprint]. 2024 Aug 9:2024.08.08.607222. doi: 10.1101/2024.08.08.607222. bioRxiv. 2024. Update in: BMC Genomics. 2024 Nov 13;25(1):1077. doi: 10.1186/s12864-024-10991-y PMID: 39149358 Free PMC article. Updated. Preprint.
Rail-RNA: scalable analysis of RNA-seq splicing and coverage.
Nellore A, Collado-Torres L, Jaffe AE, Alquicira-Hernández J, Wilks C, Pritt J, Morton J, Leek JT, Langmead B. Nellore A, et al. Bioinformatics. 2017 Dec 15;33(24):4033-4040. doi: 10.1093/bioinformatics/btw575. Bioinformatics. 2017. PMID: 27592709 Free PMC article.
Flexible expressed region analysis for RNA-seq with derfinder.
Collado-Torres L, Nellore A, Frazee AC, Wilks C, Love MI, Langmead B, Irizarry RA, Leek JT, Jaffe AE. Collado-Torres L, et al. Nucleic Acids Res. 2017 Jan 25;45(2):e9. doi: 10.1093/nar/gkw852. Epub 2016 Sep 29. Nucleic Acids Res. 2017. PMID: 27694310 Free PMC article.
85 results