Oldfield AJ - Search Results

1

TALC: Transcript-level Aware Long-read Correction.

Broseus L, Thomas A, Oldfield AJ, Severac D, Dubois E, Ritchie W. Broseus L, et al. Among authors: oldfield aj. Bioinformatics. 2020 Dec 22;36(20):5000-5006. doi: 10.1093/bioinformatics/btaa634. Bioinformatics. 2020. PMID: 32910174

2

Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells.

Yang P, Oldfield A, Kim T, Yang A, Yang JYH, Ho JWK. Yang P, et al. Bioinformatics. 2017 Jul 1;33(13):1916-1920. doi: 10.1093/bioinformatics/btx092. Bioinformatics. 2017. PMID: 28203701 Free PMC article.

3

A cell-to-patient machine learning transfer approach uncovers novel basal-like breast cancer prognostic markers amongst alternative splice variants.

Villemin JP, Lorenzi C, Cabrillac MS, Oldfield A, Ritchie W, Luco RF. Villemin JP, et al. BMC Biol. 2021 Apr 12;19(1):70. doi: 10.1186/s12915-021-01002-7. BMC Biol. 2021. PMID: 33845831 Free PMC article.

4

IRFinder-S: a comprehensive suite to discover and explore intron retention.

Lorenzi C, Barriere S, Arnold K, Luco RF, Oldfield AJ, Ritchie W. Lorenzi C, et al. Among authors: oldfield aj. Genome Biol. 2021 Nov 8;22(1):307. doi: 10.1186/s13059-021-02515-8. Genome Biol. 2021. PMID: 34749764 Free PMC article.

5

Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors.

Oldfield AJ, Yang P, Conway AE, Cinghu S, Freudenberg JM, Yellaboina S, Jothi R. Oldfield AJ, et al. Mol Cell. 2014 Sep 4;55(5):708-22. doi: 10.1016/j.molcel.2014.07.005. Epub 2014 Aug 14. Mol Cell. 2014. PMID: 25132174 Free PMC article.

6

Intragenic Enhancers Attenuate Host Gene Expression.

Cinghu S, Yang P, Kosak JP, Conway AE, Kumar D, Oldfield AJ, Adelman K, Jothi R. Cinghu S, et al. Among authors: oldfield aj. Mol Cell. 2017 Oct 5;68(1):104-117.e6. doi: 10.1016/j.molcel.2017.09.010. Mol Cell. 2017. PMID: 28985501 Free PMC article.

7

Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency.

Yang P, Humphrey SJ, Cinghu S, Pathania R, Oldfield AJ, Kumar D, Perera D, Yang JYH, James DE, Mann M, Jothi R. Yang P, et al. Among authors: oldfield aj. Cell Syst. 2019 May 22;8(5):427-445.e10. doi: 10.1016/j.cels.2019.03.012. Epub 2019 May 8. Cell Syst. 2019. PMID: 31078527 Free PMC article.

8

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region.

Oldfield AJ, Henriques T, Kumar D, Burkholder AB, Cinghu S, Paulet D, Bennett BD, Yang P, Scruggs BS, Lavender CA, Rivals E, Adelman K, Jothi R. Oldfield AJ, et al. Nat Commun. 2019 Jul 11;10(1):3072. doi: 10.1038/s41467-019-10905-7. Nat Commun. 2019. PMID: 31296853 Free PMC article.

9

Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning.

Kim HJ, Osteil P, Humphrey SJ, Cinghu S, Oldfield AJ, Patrick E, Wilkie EE, Peng G, Suo S, Jothi R, Tam PPL, Yang P. Kim HJ, et al. Among authors: oldfield aj. Nucleic Acids Res. 2020 Feb 28;48(4):1828-1842. doi: 10.1093/nar/gkz1179. Nucleic Acids Res. 2020. PMID: 31853542 Free PMC article.

10

Decoding the function of bivalent chromatin in development and cancer.

Kumar D, Cinghu S, Oldfield AJ, Yang P, Jothi R. Kumar D, et al. Among authors: oldfield aj. Genome Res. 2021 Dec;31(12):2170-2184. doi: 10.1101/gr.275736.121. Epub 2021 Oct 19. Genome Res. 2021. PMID: 34667120 Free PMC article.

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