van Opijnen T - Search Results

1

Entropy of a bacterial stress response is a generalizable predictor for fitness and antibiotic sensitivity.

Zhu Z, Surujon D, Ortiz-Marquez JC, Huo W, Isberg RR, Bento J, van Opijnen T. Zhu Z, et al. Among authors: van opijnen t. Nat Commun. 2020 Aug 31;11(1):4365. doi: 10.1038/s41467-020-18134-z. Nat Commun. 2020. PMID: 32868761 Free PMC article.

2

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms.

van Opijnen T, Bodi KL, Camilli A. van Opijnen T, et al. Nat Methods. 2009 Oct;6(10):767-72. doi: 10.1038/nmeth.1377. Epub 2009 Sep 20. Nat Methods. 2009. PMID: 19767758 Free PMC article.

3

Genome-Wide Fitness and Genetic Interactions Determined by Tn-seq, a High-Throughput Massively Parallel Sequencing Method for Microorganisms.

van Opijnen T, Lazinski DW, Camilli A. van Opijnen T, et al. Curr Protoc Mol Biol. 2014 Apr 14;106:7.16.1-7.16.24. doi: 10.1002/0471142727.mb0716s106. Curr Protoc Mol Biol. 2014. PMID: 24733243 Free PMC article. Review.

4

Strain Dependent Genetic Networks for Antibiotic-Sensitivity in a Bacterial Pathogen with a Large Pan-Genome.

van Opijnen T, Dedrick S, Bento J. van Opijnen T, et al. PLoS Pathog. 2016 Sep 8;12(9):e1005869. doi: 10.1371/journal.ppat.1005869. eCollection 2016 Sep. PLoS Pathog. 2016. PMID: 27607357 Free PMC article.

5

Antibiotics Disrupt Coordination between Transcriptional and Phenotypic Stress Responses in Pathogenic Bacteria.

Jensen PA, Zhu Z, van Opijnen T. Jensen PA, et al. Among authors: van opijnen t. Cell Rep. 2017 Aug 15;20(7):1705-1716. doi: 10.1016/j.celrep.2017.07.062. Cell Rep. 2017. PMID: 28813680 Free PMC article.

6

The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence.

Warrier I, Ram-Mohan N, Zhu Z, Hazery A, Echlin H, Rosch J, Meyer MM, van Opijnen T. Warrier I, et al. Among authors: van opijnen t. PLoS Pathog. 2018 Dec 5;14(12):e1007461. doi: 10.1371/journal.ppat.1007461. eCollection 2018 Dec. PLoS Pathog. 2018. PMID: 30517198 Free PMC article.

7

The Landscape of Phenotypic and Transcriptional Responses to Ciprofloxacin in Acinetobacter baumannii: Acquired Resistance Alleles Modulate Drug-Induced SOS Response and Prophage Replication.

Geisinger E, Vargas-Cuebas G, Mortman NJ, Syal S, Dai Y, Wainwright EL, Lazinski D, Wood S, Zhu Z, Anthony J, van Opijnen T, Isberg RR. Geisinger E, et al. Among authors: van opijnen t. mBio. 2019 Jun 11;10(3):e01127-19. doi: 10.1128/mBio.01127-19. mBio. 2019. PMID: 31186328 Free PMC article.

8

Droplet Tn-Seq combines microfluidics with Tn-Seq for identifying complex single-cell phenotypes.

Thibault D, Jensen PA, Wood S, Qabar C, Clark S, Shainheit MG, Isberg RR, van Opijnen T. Thibault D, et al. Among authors: van opijnen t. Nat Commun. 2019 Dec 16;10(1):5729. doi: 10.1038/s41467-019-13719-9. Nat Commun. 2019. PMID: 31844066 Free PMC article.

9

ShinyOmics: collaborative exploration of omics-data.

Surujon D, van Opijnen T. Surujon D, et al. Among authors: van opijnen t. BMC Bioinformatics. 2020 Jan 17;21(1):22. doi: 10.1186/s12859-020-3360-x. BMC Bioinformatics. 2020. PMID: 31952481 Free PMC article.

10

Dielectrophoresis assisted rapid, selective and single cell detection of antibiotic resistant bacteria with G-FETs.

Kumar N, Wang W, Ortiz-Marquez JC, Catalano M, Gray M, Biglari N, Hikari K, Ling X, Gao J, van Opijnen T, Burch KS. Kumar N, et al. Among authors: van opijnen t. Biosens Bioelectron. 2020 May 15;156:112123. doi: 10.1016/j.bios.2020.112123. Epub 2020 Feb 27. Biosens Bioelectron. 2020. PMID: 32174552 Free PMC article.

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