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ShinyOmics: collaborative exploration of omics-data.
Surujon D, van Opijnen T. Surujon D, et al. BMC Bioinformatics. 2020 Jan 17;21(1):22. doi: 10.1186/s12859-020-3360-x. BMC Bioinformatics. 2020. PMID: 31952481 Free PMC article.
A bacterial pan-genome makes gene essentiality strain-dependent and evolvable.
Rosconi F, Rudmann E, Li J, Surujon D, Anthony J, Frank M, Jones DS, Rock C, Rosch JW, Johnston CD, van Opijnen T. Rosconi F, et al. Among authors: surujon d. Nat Microbiol. 2022 Oct;7(10):1580-1592. doi: 10.1038/s41564-022-01208-7. Epub 2022 Sep 12. Nat Microbiol. 2022. PMID: 36097170 Free PMC article.
A role for long-chain acyl-CoA synthetase-4 (ACSL4) in diet-induced phospholipid remodeling and obesity-associated adipocyte dysfunction.
Killion EA, Reeves AR, El Azzouny MA, Yan QW, Surujon D, Griffin JD, Bowman TA, Wang C, Matthan NR, Klett EL, Kong D, Newman JW, Han X, Lee MJ, Coleman RA, Greenberg AS. Killion EA, et al. Among authors: surujon d. Mol Metab. 2018 Mar;9:43-56. doi: 10.1016/j.molmet.2018.01.012. Epub 2018 Jan 31. Mol Metab. 2018. PMID: 29398618 Free PMC article.
Small-World Networks and RNA Secondary Structures.
Surujon D, Ponty Y, Clote P. Surujon D, et al. J Comput Biol. 2019 Jan;26(1):16-26. doi: 10.1089/cmb.2018.0125. Epub 2018 Oct 31. J Comput Biol. 2019. PMID: 30383444
A Pangenomic Perspective on the Emergence, Maintenance, and Predictability of Antibiotic Resistance.
Wood S, Zhu K, Surujon D, Rosconi F, Ortiz-Marquez JC, van Opijnen T. Wood S, et al. Among authors: surujon d. 2020 May 1. In: Tettelin H, Medini D, editors. The Pangenome: Diversity, Dynamics and Evolution of Genomes [Internet]. Cham (CH): Springer; 2020. 2020 May 1. In: Tettelin H, Medini D, editors. The Pangenome: Diversity, Dynamics and Evolution of Genomes [Internet]. Cham (CH): Springer; 2020. PMID: 32633921 Free Books & Documents. Review.