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Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale.
Li X, Li Z, Zhou H, Gaynor SM, Liu Y, Chen H, Sun R, Dey R, Arnett DK, Aslibekyan S, Ballantyne CM, Bielak LF, Blangero J, Boerwinkle E, Bowden DW, Broome JG, Conomos MP, Correa A, Cupples LA, Curran JE, Freedman BI, Guo X, Hindy G, Irvin MR, Kardia SLR, Kathiresan S, Khan AT, Kooperberg CL, Laurie CC, Liu XS, Mahaney MC, Manichaikul AW, Martin LW, Mathias RA, McGarvey ST, Mitchell BD, Montasser ME, Moore JE, Morrison AC, O'Connell JR, Palmer ND, Pampana A, Peralta JM, Peyser PA, Psaty BM, Redline S, Rice KM, Rich SS, Smith JA, Tiwari HK, Tsai MY, Vasan RS, Wang FF, Weeks DE, Weng Z, Wilson JG, Yanek LR; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; TOPMed Lipids Working Group; Neale BM, Sunyaev SR, Abecasis GR, Rotter JI, Willer CJ, Peloso GM, Natarajan P, Lin X. Li X, et al. Among authors: peralta jm. Nat Genet. 2020 Sep;52(9):969-983. doi: 10.1038/s41588-020-0676-4. Epub 2020 Aug 24. Nat Genet. 2020. PMID: 32839606 Free PMC article.
Systems genetics of the nuclear factor-κB signal transduction network. I. Detection of several quantitative trait loci potentially relevant to aging.
Diego VP, Curran JE, Charlesworth J, Peralta JM, Voruganti VS, Cole SA, Dyer TD, Johnson MP, Moses EK, Göring HH, Williams JT, Comuzzie AG, Almasy L, Blangero J, Williams-Blangero S. Diego VP, et al. Among authors: peralta jm. Mech Ageing Dev. 2012 Jan;133(1):11-9. doi: 10.1016/j.mad.2011.11.007. Epub 2011 Dec 1. Mech Ageing Dev. 2012. PMID: 22155176 Free PMC article.
Data for Genetic Analysis Workshop 18: human whole genome sequence, blood pressure, and simulated phenotypes in extended pedigrees.
Almasy L, Dyer TD, Peralta JM, Jun G, Wood AR, Fuchsberger C, Almeida MA, Kent JW Jr, Fowler S, Blackwell TW, Puppala S, Kumar S, Curran JE, Lehman D, Abecasis G, Duggirala R, Blangero J; T2D-GENES Consortium. Almasy L, et al. Among authors: peralta jm. BMC Proc. 2014 Jun 17;8(Suppl 1):S2. doi: 10.1186/1753-6561-8-S1-S2. eCollection 2014. BMC Proc. 2014. PMID: 25519314 Free PMC article.
Pedigree-based random effect tests to screen gene pathways.
Almeida M, Peralta JM, Farook V, Puppala S, Kent JW Jr, Duggirala R, Blangero J. Almeida M, et al. Among authors: peralta jm. BMC Proc. 2014 Jun 17;8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S100. doi: 10.1186/1753-6561-8-S1-S100. eCollection 2014. BMC Proc. 2014. PMID: 25519354 Free PMC article.
A variance component-based gene burden test.
Peralta JM, Almeida M, Kent JW Jr, Blangero J. Peralta JM, et al. BMC Proc. 2014 Jun 17;8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S49. doi: 10.1186/1753-6561-8-S1-S49. eCollection 2014. BMC Proc. 2014. PMID: 25519388 Free PMC article.
Evaluation of estimated genetic values and their application to genome-wide investigation of systolic blood pressure.
Quillen EE, Voruganti VS, Chittoor G, Rubicz R, Peralta JM, Almeida MA, Kent JW Jr, Diego VP, Dyer TD, Comuzzie AG, Göring HH, Duggirala R, Almasy L, Blangero J. Quillen EE, et al. Among authors: peralta jm. BMC Proc. 2014 Jun 17;8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S66. doi: 10.1186/1753-6561-8-S1-S66. eCollection 2014. BMC Proc. 2014. PMID: 25519398 Free PMC article.
Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.
Chu AY, Deng X, Fisher VA, Drong A, Zhang Y, Feitosa MF, Liu CT, Weeks O, Choh AC, Duan Q, Dyer TD, Eicher JD, Guo X, Heard-Costa NL, Kacprowski T, Kent JW Jr, Lange LA, Liu X, Lohman K, Lu L, Mahajan A, O'Connell JR, Parihar A, Peralta JM, Smith AV, Zhang Y, Homuth G, Kissebah AH, Kullberg J, Laqua R, Launer LJ, Nauck M, Olivier M, Peyser PA, Terry JG, Wojczynski MK, Yao J, Bielak LF, Blangero J, Borecki IB, Bowden DW, Carr JJ, Czerwinski SA, Ding J, Friedrich N, Gudnason V, Harris TB, Ingelsson E, Johnson AD, Kardia SL, Langefeld CD, Lind L, Liu Y, Mitchell BD, Morris AP, Mosley TH Jr, Rotter JI, Shuldiner AR, Towne B, Völzke H, Wallaschofski H, Wilson JG, Allison M, Lindgren CM, Goessling W, Cupples LA, Steinhauser ML, Fox CS. Chu AY, et al. Among authors: peralta jm. Nat Genet. 2017 Jan;49(1):125-130. doi: 10.1038/ng.3738. Epub 2016 Dec 5. Nat Genet. 2017. PMID: 27918534 Free PMC article.
Omics-squared: human genomic, transcriptomic and phenotypic data for genetic analysis workshop 19.
Blangero J, Teslovich TM, Sim X, Almeida MA, Jun G, Dyer TD, Johnson M, Peralta JM, Manning A, Wood AR, Fuchsberger C, Kent JW Jr, Aguilar DA, Below JE, Farook VS, Arya R, Fowler S, Blackwell TW, Puppala S, Kumar S, Glahn DC, Moses EK, Curran JE, Thameem F, Jenkinson CP, DeFronzo RA, Lehman DM, Hanis C, Abecasis G, Boehnke M, Göring H, Duggirala R, Almasy L; T2D-GENES Consortium. Blangero J, et al. Among authors: peralta jm. BMC Proc. 2016 Oct 18;10(Suppl 7):71-77. doi: 10.1186/s12919-016-0008-y. eCollection 2016. BMC Proc. 2016. PMID: 27980614 Free PMC article.
247 results