Wei CL - Search Results

1

ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization.

Lee B, Wang J, Cai L, Kim M, Namburi S, Tjong H, Feng Y, Wang P, Tang Z, Abbas A, Wei CL, Ruan Y, Li S. Lee B, et al. Among authors: wei cl. Sci Adv. 2020 Jul 10;6(28):eaay2078. doi: 10.1126/sciadv.aay2078. eCollection 2020 Jul. Sci Adv. 2020. PMID: 32832596 Free PMC article.

2

RNA viral community in human feces: prevalence of plant pathogenic viruses.

Zhang T, Breitbart M, Lee WH, Run JQ, Wei CL, Soh SW, Hibberd ML, Liu ET, Rohwer F, Ruan Y. Zhang T, et al. Among authors: wei cl. PLoS Biol. 2006 Jan;4(1):e3. doi: 10.1371/journal.pbio.0040003. PLoS Biol. 2006. PMID: 16336043 Free PMC article.

3

A global map of p53 transcription-factor binding sites in the human genome.

Wei CL, Wu Q, Vega VB, Chiu KP, Ng P, Zhang T, Shahab A, Yong HC, Fu Y, Weng Z, Liu J, Zhao XD, Chew JL, Lee YL, Kuznetsov VA, Sung WK, Miller LD, Lim B, Liu ET, Yu Q, Ng HH, Ruan Y. Wei CL, et al. Cell. 2006 Jan 13;124(1):207-19. doi: 10.1016/j.cell.2005.10.043. Cell. 2006. PMID: 16413492 Free article.

4

Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes.

Ng P, Tan JJ, Ooi HS, Lee YL, Chiu KP, Fullwood MJ, Srinivasan KG, Perbost C, Du L, Sung WK, Wei CL, Ruan Y. Ng P, et al. Among authors: wei cl. Nucleic Acids Res. 2006 Jul 13;34(12):e84. doi: 10.1093/nar/gkl444. Nucleic Acids Res. 2006. PMID: 16840528 Free PMC article.

5

PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data.

Chiu KP, Wong CH, Chen Q, Ariyaratne P, Ooi HS, Wei CL, Sung WK, Ruan Y. Chiu KP, et al. Among authors: wei cl. BMC Bioinformatics. 2006 Aug 25;7:390. doi: 10.1186/1471-2105-7-390. BMC Bioinformatics. 2006. PMID: 16934139 Free PMC article.

6

Paired-end diTagging for transcriptome and genome analysis.

Ng P, Wei CL, Ruan Y. Ng P, et al. Among authors: wei cl. Curr Protoc Mol Biol. 2007 Jul;Chapter 21:Unit 21.12. doi: 10.1002/0471142727.mb2112s79. Curr Protoc Mol Biol. 2007. PMID: 18265396

7

Computational analysis and modeling of genome-scale avidity distribution of transcription factor binding sites in chip-pet experiments.

Kuznetsov VA, Orlov YL, Wei CL, Ruan Y. Kuznetsov VA, et al. Among authors: wei cl. Genome Inform. 2007;19:83-94. Genome Inform. 2007. PMID: 18546507

8

Tackling the epigenome in the pluripotent stem cells.

Zhao X, Ruan Y, Wei CL. Zhao X, et al. Among authors: wei cl. J Genet Genomics. 2008 Jul;35(7):403-12. doi: 10.1016/S1673-8527(08)60058-2. J Genet Genomics. 2008. PMID: 18640620 Review.

9

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses.

Fullwood MJ, Wei CL, Liu ET, Ruan Y. Fullwood MJ, et al. Among authors: wei cl. Genome Res. 2009 Apr;19(4):521-32. doi: 10.1101/gr.074906.107. Genome Res. 2009. PMID: 19339662 Free PMC article. Review.

10

An oestrogen-receptor-alpha-bound human chromatin interactome.

Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, Mohamed YB, Orlov YL, Velkov S, Ho A, Mei PH, Chew EG, Huang PY, Welboren WJ, Han Y, Ooi HS, Ariyaratne PN, Vega VB, Luo Y, Tan PY, Choy PY, Wansa KD, Zhao B, Lim KS, Leow SC, Yow JS, Joseph R, Li H, Desai KV, Thomsen JS, Lee YK, Karuturi RK, Herve T, Bourque G, Stunnenberg HG, Ruan X, Cacheux-Rataboul V, Sung WK, Liu ET, Wei CL, Cheung E, Ruan Y. Fullwood MJ, et al. Among authors: wei cl. Nature. 2009 Nov 5;462(7269):58-64. doi: 10.1038/nature08497. Nature. 2009. PMID: 19890323 Free PMC article.

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