Namburi S - Search Results

1

ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization.

Lee B, Wang J, Cai L, Kim M, Namburi S, Tjong H, Feng Y, Wang P, Tang Z, Abbas A, Wei CL, Ruan Y, Li S. Lee B, et al. Among authors: namburi s. Sci Adv. 2020 Jul 10;6(28):eaay2078. doi: 10.1126/sciadv.aay2078. eCollection 2020 Jul. Sci Adv. 2020. PMID: 32832596 Free PMC article.

2

CUP-AI-Dx: A tool for inferring cancer tissue of origin and molecular subtype using RNA gene-expression data and artificial intelligence.

Zhao Y, Pan Z, Namburi S, Pattison A, Posner A, Balachander S, Paisie CA, Reddi HV, Rueter J, Gill AJ, Fox S, Raghav KPS, Flynn WF, Tothill RW, Li S, Karuturi RKM, George J. Zhao Y, et al. Among authors: namburi s. EBioMedicine. 2020 Nov;61:103030. doi: 10.1016/j.ebiom.2020.103030. Epub 2020 Oct 9. EBioMedicine. 2020. PMID: 33039710 Free PMC article.

3

CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens.

Bais P, Namburi S, Gatti DM, Zhang X, Chuang JH. Bais P, et al. Among authors: namburi s. Bioinformatics. 2017 Oct 1;33(19):3110-3112. doi: 10.1093/bioinformatics/btx375. Bioinformatics. 2017. PMID: 28605406 Free PMC article.

4

Distribution-based measures of tumor heterogeneity are sensitive to mutation calling and lack strong clinical predictive power.

Noorbakhsh J, Kim H, Namburi S, Chuang JH. Noorbakhsh J, et al. Among authors: namburi s. Sci Rep. 2018 Jul 30;8(1):11445. doi: 10.1038/s41598-018-29154-7. Sci Rep. 2018. PMID: 30061557 Free PMC article.

5

Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers.

Kim H, Nguyen NP, Turner K, Wu S, Gujar AD, Luebeck J, Liu J, Deshpande V, Rajkumar U, Namburi S, Amin SB, Yi E, Menghi F, Schulte JH, Henssen AG, Chang HY, Beck CR, Mischel PS, Bafna V, Verhaak RGW. Kim H, et al. Among authors: namburi s. Nat Genet. 2020 Sep;52(9):891-897. doi: 10.1038/s41588-020-0678-2. Epub 2020 Aug 17. Nat Genet. 2020. PMID: 32807987 Free PMC article.

6

Mutations in DNA repair genes are associated with increased neo-antigen load and activated T cell infiltration in lung adenocarcinoma.

Chae YK, Anker JF, Bais P, Namburi S, Giles FJ, Chuang JH. Chae YK, et al. Among authors: namburi s. Oncotarget. 2017 Dec 15;9(8):7949-7960. doi: 10.18632/oncotarget.23742. eCollection 2018 Jan 30. Oncotarget. 2017. PMID: 29487705 Free PMC article.

7

Mutations in DNA repair genes are associated with increased neoantigen burden and a distinct immunophenotype in lung squamous cell carcinoma.

Chae YK, Anker JF, Oh MS, Bais P, Namburi S, Agte S, Giles FJ, Chuang JH. Chae YK, et al. Among authors: namburi s. Sci Rep. 2019 Mar 1;9(1):3235. doi: 10.1038/s41598-019-39594-4. Sci Rep. 2019. PMID: 30824826 Free PMC article.

8

Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors.

Zhan YA, Wray CG, Namburi S, Glantz ST, Laubenbacher R, Chuang JH. Zhan YA, et al. Among authors: namburi s. PLoS Comput Biol. 2019 Jun 13;15(6):e1007026. doi: 10.1371/journal.pcbi.1007026. eCollection 2019 Jun. PLoS Comput Biol. 2019. PMID: 31194735 Free PMC article.

9

Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images.

Noorbakhsh J, Farahmand S, Foroughi Pour A, Namburi S, Caruana D, Rimm D, Soltanieh-Ha M, Zarringhalam K, Chuang JH. Noorbakhsh J, et al. Among authors: namburi s. Nat Commun. 2020 Dec 11;11(1):6367. doi: 10.1038/s41467-020-20030-5. Nat Commun. 2020. PMID: 33311458 Free PMC article.

10

In vivo assessment of trabecular smooth muscle tone, its application in pharmaco-cavernosometry and analysis of intracavernous pressure determinants.

Hatzichristou DG, Saenz de Tejada I, Kupferman S, Namburi S, Pescatori ES, Udelson D, Goldstein I. Hatzichristou DG, et al. Among authors: namburi s. J Urol. 1995 Apr;153(4):1126-35. J Urol. 1995. PMID: 7869480 Free article.

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