Iyer M - Search Results

1

The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins.

Jaroszewski L, Iyer M, Alisoltani A, Sedova M, Godzik A. Jaroszewski L, et al. Among authors: iyer m. bioRxiv [Preprint]. 2020 Aug 10:2020.08.10.244756. doi: 10.1101/2020.08.10.244756. bioRxiv. 2020. Update in: PLoS Comput Biol. 2021 Jul 8;17(7):e1009147. doi: 10.1371/journal.pcbi.1009147 PMID: 32817947 Free PMC article. Updated. Preprint.

2

Cancer3D 2.0: interactive analysis of 3D patterns of cancer mutations in cancer subsets.

Sedova M, Iyer M, Li Z, Jaroszewski L, Post KW, Hrabe T, Porta-Pardo E, Godzik A. Sedova M, et al. Among authors: iyer m. Nucleic Acids Res. 2019 Jan 8;47(D1):D895-D899. doi: 10.1093/nar/gky1098. Nucleic Acids Res. 2019. PMID: 30407596 Free PMC article.

3

Difference contact maps: From what to why in the analysis of the conformational flexibility of proteins.

Iyer M, Li Z, Jaroszewski L, Sedova M, Godzik A. Iyer M, et al. PLoS One. 2020 Mar 12;15(3):e0226702. doi: 10.1371/journal.pone.0226702. eCollection 2020. PLoS One. 2020. PMID: 32163442 Free PMC article.

4

FATCAT 2.0: towards a better understanding of the structural diversity of proteins.

Li Z, Jaroszewski L, Iyer M, Sedova M, Godzik A. Li Z, et al. Among authors: iyer m. Nucleic Acids Res. 2020 Jul 2;48(W1):W60-W64. doi: 10.1093/nar/gkaa443. Nucleic Acids Res. 2020. PMID: 32469061 Free PMC article.

5

ModFlex: Towards Function Focused Protein Modeling.

Sedova M, Jaroszewski L, Iyer M, Li Z, Godzik A. Sedova M, et al. Among authors: iyer m. J Mol Biol. 2021 May 28;433(11):166828. doi: 10.1016/j.jmb.2021.166828. Epub 2021 Jan 23. J Mol Biol. 2021. PMID: 33972023 Free PMC article.

6

The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins.

Jaroszewski L, Iyer M, Alisoltani A, Sedova M, Godzik A. Jaroszewski L, et al. Among authors: iyer m. PLoS Comput Biol. 2021 Jul 8;17(7):e1009147. doi: 10.1371/journal.pcbi.1009147. eCollection 2021 Jul. PLoS Comput Biol. 2021. PMID: 34237054 Free PMC article.

7

Increased Frequency of Indels in Hypervariable Regions of SARS-CoV-2 Proteins-A Possible Signature of Adaptive Selection.

Alisoltani A, Jaroszewski L, Iyer M, Iranzadeh A, Godzik A. Alisoltani A, et al. Among authors: iyer m. Front Genet. 2022 Jun 2;13:875406. doi: 10.3389/fgene.2022.875406. eCollection 2022. Front Genet. 2022. PMID: 35719386 Free PMC article.

8

What the protein data bank tells us about the evolutionary conservation of protein conformational diversity.

Iyer M, Jaroszewski L, Sedova M, Godzik A. Iyer M, et al. Protein Sci. 2022 Jul;31(7):e4325. doi: 10.1002/pro.4325. Protein Sci. 2022. PMID: 35762711 Free PMC article.

9

Gender differences in smoking-induced changes in the tumor immune microenvironment.

Alisoltani A, Qiu X, Jaroszewski L, Sedova M, Iyer M, Godzik A. Alisoltani A, et al. Among authors: iyer m. Arch Biochem Biophys. 2023 May 1;739:109579. doi: 10.1016/j.abb.2023.109579. Epub 2023 Mar 16. Arch Biochem Biophys. 2023. PMID: 36933758

10

Shared and Unique Evolutionary Trajectories to Ciprofloxacin Resistance in Gram-Negative Bacterial Pathogens.

Zlamal JE, Leyn SA, Iyer M, Elane ML, Wong NA, Wamsley JW, Vercruysse M, Garcia-Alcalde F, Osterman AL. Zlamal JE, et al. Among authors: iyer m. mBio. 2021 Jun 29;12(3):e0098721. doi: 10.1128/mBio.00987-21. Epub 2021 Jun 22. mBio. 2021. PMID: 34154405 Free PMC article.

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