Lankaš F - Search Results

1

Impact of the Nucleosome Histone Core on the Structure and Dynamics of DNA-Containing Pyrimidine-Pyrimidone (6-4) Photoproduct.

Matoušková E, Bignon E, Claerbout VEP, Dršata T, Gillet N, Monari A, Dumont E, Lankaš F. Matoušková E, et al. Among authors: lankas f. J Chem Theory Comput. 2020 Sep 8;16(9):5972-5981. doi: 10.1021/acs.jctc.0c00593. Epub 2020 Aug 26. J Chem Theory Comput. 2020. PMID: 32810397

2

Strikingly different effects of hydrogen bonding on the photodynamics of individual nucleobases in DNA: comparison of guanine and cytosine.

Zelený T, Ruckenbauer M, Aquino AJ, Müller T, Lankaš F, Dršata T, Hase WL, Nachtigallova D, Lischka H. Zelený T, et al. Among authors: lankas f. J Am Chem Soc. 2012 Aug 22;134(33):13662-9. doi: 10.1021/ja3028845. Epub 2012 Aug 14. J Am Chem Soc. 2012. PMID: 22845192

3

Structure, Stiffness and Substates of the Dickerson-Drew Dodecamer.

Dršata T, Pérez A, Orozco M, Morozov AV, Sponer J, Lankaš F. Dršata T, et al. Among authors: lankas f. J Chem Theory Comput. 2013;9(1):707-721. doi: 10.1021/ct300671y. J Chem Theory Comput. 2013. PMID: 23976886 Free PMC article.

4

Effect of 8-oxoguanine on DNA structure and deformability.

Dršata T, Kara M, Zacharias M, Lankaš F. Dršata T, et al. Among authors: lankas f. J Phys Chem B. 2013 Oct 3;117(39):11617-22. doi: 10.1021/jp407562t. Epub 2013 Sep 20. J Phys Chem B. 2013. PMID: 24028561

5

Structure, dynamics, and interactions of a C4'-oxidized abasic site in DNA: a concomitant strand scission reverses affinities.

Patel C, Dršata T, Lankaš F, Dumont E. Patel C, et al. Among authors: lankas f. Biochemistry. 2013 Nov 12;52(45):8115-25. doi: 10.1021/bi401268q. Epub 2013 Oct 30. Biochemistry. 2013. PMID: 24131173

6

Mechanical properties of symmetric and asymmetric DNA A-tracts: implications for looping and nucleosome positioning.

Dršata T, Špačková N, Jurečka P, Zgarbová M, Šponer J, Lankaš F. Dršata T, et al. Among authors: lankas f. Nucleic Acids Res. 2014 Jun;42(11):7383-94. doi: 10.1093/nar/gku338. Epub 2014 May 14. Nucleic Acids Res. 2014. PMID: 24829460 Free PMC article.

7

Effect O6-guanine alkylation on DNA flexibility studied by comparative molecular dynamics simulations.

Kara M, Drsata T, Lankas F, Zacharias M. Kara M, et al. Among authors: lankas f. Biopolymers. 2015 Jan;103(1):23-32. doi: 10.1002/bip.22535. Biopolymers. 2015. PMID: 25130987

8

Insights into the structure of intrastrand cross-link DNA lesion-containing oligonucleotides: G[8-5m]T and G[8-5]C from molecular dynamics simulations.

Dumont E, Dršata T, Guerra CF, Lankaš F. Dumont E, et al. Among authors: lankas f. Biochemistry. 2015 Feb 10;54(5):1259-67. doi: 10.1021/bi501157v. Epub 2015 Jan 28. Biochemistry. 2015. PMID: 25600505

9

Multiscale modelling of DNA mechanics.

Dršata T, Lankaš F. Dršata T, et al. Among authors: lankas f. J Phys Condens Matter. 2015 Aug 19;27(32):323102. doi: 10.1088/0953-8984/27/32/323102. Epub 2015 Jul 21. J Phys Condens Matter. 2015. PMID: 26194779 Review.

10

Mechanical Model of DNA Allostery.

Dršata T, Zgarbová M, Špačková N, Jurečka P, Šponer J, Lankaš F. Dršata T, et al. Among authors: lankas f. J Phys Chem Lett. 2014 Nov 6;5(21):3831-5. doi: 10.1021/jz501826q. Epub 2014 Oct 21. J Phys Chem Lett. 2014. PMID: 26278756

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