Niccolai N - Search Results

1

A deep attention network for predicting amino acid signals in the formation of [Formula: see text]-helices.

Visibelli A, Bongini P, Rossi A, Niccolai N, Bianchini M. Visibelli A, et al. Among authors: niccolai n. J Bioinform Comput Biol. 2020 Oct;18(5):2050028. doi: 10.1142/S0219720020500286. Epub 2020 Aug 6. J Bioinform Comput Biol. 2020. PMID: 32757808

2

ProCoCoA: A quantitative approach for analyzing protein core composition.

Bottini S, Bernini A, De Chiara M, Garlaschelli D, Spiga O, Dioguardi M, Vannuccini E, Tramontano A, Niccolai N. Bottini S, et al. Among authors: niccolai n. Comput Biol Chem. 2013 Apr;43:29-34. doi: 10.1016/j.compbiolchem.2012.12.007. Epub 2012 Dec 31. Comput Biol Chem. 2013. PMID: 23333734

3

A structural bioinformatics investigation on protein-DNA complexes delineates their modes of interaction.

Gardini S, Furini S, Santucci A, Niccolai N. Gardini S, et al. Among authors: niccolai n. Mol Biosyst. 2017 May 2;13(5):1010-1017. doi: 10.1039/c7mb00071e. Mol Biosyst. 2017. PMID: 28418051

4

Glycine-induced formation and druggability score prediction of protein surface pockets.

Bongini P, Niccolai N, Bianchini M. Bongini P, et al. Among authors: niccolai n. J Bioinform Comput Biol. 2019 Oct;17(5):1950026. doi: 10.1142/S0219720019500264. Epub 2019 Jun 11. J Bioinform Comput Biol. 2019. PMID: 31744363

5

A possible strategy to fight COVID-19: Interfering with spike glycoprotein trimerization.

Bongini P, Trezza A, Bianchini M, Spiga O, Niccolai N. Bongini P, et al. Among authors: niccolai n. Biochem Biophys Res Commun. 2020 Jul 12;528(1):35-38. doi: 10.1016/j.bbrc.2020.04.007. Epub 2020 Apr 9. Biochem Biophys Res Commun. 2020. PMID: 32451080 Free PMC article.

6

Structural Bioinformatic Survey of Protein-Small Molecule Interfaces Delineates the Role of Glycine in Surface Pocket Formation.

Bongini P, Niccolai N, Trezza A, Mangiavacchi G, Santucci A, Spiga O, Bianchini M, Gardini S. Bongini P, et al. Among authors: niccolai n. IEEE/ACM Trans Comput Biol Bioinform. 2022 May-Jun;19(3):1881-1886. doi: 10.1109/TCBB.2020.3033384. Epub 2022 Jun 3. IEEE/ACM Trans Comput Biol Bioinform. 2022. PMID: 33095703

7

Structural bioinformatics survey on disease-inducing missense mutations.

Bongini P, Gardini S, Bianchini M, Spiga O, Niccolai N. Bongini P, et al. Among authors: niccolai n. J Bioinform Comput Biol. 2021 Jun;19(3):2150008. doi: 10.1142/S0219720021500086. Epub 2021 Apr 22. J Bioinform Comput Biol. 2021. PMID: 33888033

8

A Bioinformatics Approach to Investigate Structural and Non-Structural Proteins in Human Coronaviruses.

Cicaloni V, Costanti F, Pasqui A, Bianchini M, Niccolai N, Bongini P. Cicaloni V, et al. Among authors: niccolai n. Front Genet. 2022 Jun 14;13:891418. doi: 10.3389/fgene.2022.891418. eCollection 2022. Front Genet. 2022. PMID: 35774504 Free PMC article.

9

Molecular Origins of the Mendelian Rare Diseases Reviewed by Orpha.net: A Structural Bioinformatics Investigation.

Visibelli A, Finetti R, Niccolai N, Spiga O, Santucci A. Visibelli A, et al. Among authors: niccolai n. Int J Mol Sci. 2024 Jun 25;25(13):6953. doi: 10.3390/ijms25136953. Int J Mol Sci. 2024. PMID: 39000061 Free PMC article.

10

Three-dimensional computation of atom depth in complex molecular structures.

Varrazzo D, Bernini A, Spiga O, Ciutti A, Chiellini S, Venditti V, Bracci L, Niccolai N. Varrazzo D, et al. Among authors: niccolai n. Bioinformatics. 2005 Jun 15;21(12):2856-60. doi: 10.1093/bioinformatics/bti444. Epub 2005 Apr 12. Bioinformatics. 2005. PMID: 15827080

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