Burns KH - Search Results

1

Polymorphic mobile element insertions contribute to gene expression and alternative splicing in human tissues.

Cao X, Zhang Y, Payer LM, Lords H, Steranka JP, Burns KH, Xing J. Cao X, et al. Among authors: burns kh. Genome Biol. 2020 Jul 27;21(1):185. doi: 10.1186/s13059-020-02101-4. Genome Biol. 2020. PMID: 32718348 Free PMC article.

2

Mobile interspersed repeats are major structural variants in the human genome.

Huang CR, Schneider AM, Lu Y, Niranjan T, Shen P, Robinson MA, Steranka JP, Valle D, Civin CI, Wang T, Wheelan SJ, Ji H, Boeke JD, Burns KH. Huang CR, et al. Among authors: burns kh. Cell. 2010 Jun 25;141(7):1171-82. doi: 10.1016/j.cell.2010.05.026. Cell. 2010. PMID: 20602999 Free PMC article.

3

Identification of replication competent murine gammaretroviruses in commonly used prostate cancer cell lines.

Sfanos KS, Aloia AL, Hicks JL, Esopi DM, Steranka JP, Shao W, Sanchez-Martinez S, Yegnasubramanian S, Burns KH, Rein A, De Marzo AM. Sfanos KS, et al. Among authors: burns kh. PLoS One. 2011;6(6):e20874. doi: 10.1371/journal.pone.0020874. Epub 2011 Jun 17. PLoS One. 2011. PMID: 21698104 Free PMC article.

4

Fine mapping of V(D)J recombinase mediated rearrangements in human lymphoid malignancies.

Halper-Stromberg E, Steranka J, Giraldo-Castillo N, Fuller T, Desiderio S, Burns KH. Halper-Stromberg E, et al. Among authors: burns kh. BMC Genomics. 2013 Aug 19;14:565. doi: 10.1186/1471-2164-14-565. BMC Genomics. 2013. PMID: 23957733 Free PMC article.

5

Visualization and probability-based scoring of structural variants within repetitive sequences.

Halper-Stromberg E, Steranka J, Burns KH, Sabunciyan S, Irizarry RA. Halper-Stromberg E, et al. Among authors: burns kh. Bioinformatics. 2014 Jun 1;30(11):1514-21. doi: 10.1093/bioinformatics/btu054. Epub 2014 Feb 4. Bioinformatics. 2014. PMID: 24501098 Free PMC article.

6

Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma.

Rodić N, Steranka JP, Makohon-Moore A, Moyer A, Shen P, Sharma R, Kohutek ZA, Huang CR, Ahn D, Mita P, Taylor MS, Barker NJ, Hruban RH, Iacobuzio-Donahue CA, Boeke JD, Burns KH. Rodić N, et al. Among authors: burns kh. Nat Med. 2015 Sep;21(9):1060-4. doi: 10.1038/nm.3919. Epub 2015 Aug 10. Nat Med. 2015. PMID: 26259033 Free PMC article.

7

Somatic retrotransposition is infrequent in glioblastomas.

Achanta P, Steranka JP, Tang Z, Rodić N, Sharma R, Yang WR, Ma S, Grivainis M, Huang CRL, Schneider AM, Gallia GL, Riggins GJ, Quinones-Hinojosa A, Fenyö D, Boeke JD, Burns KH. Achanta P, et al. Among authors: burns kh. Mob DNA. 2016 Nov 11;7:22. doi: 10.1186/s13100-016-0077-5. eCollection 2016. Mob DNA. 2016. PMID: 27843500 Free PMC article.

8

Human transposon insertion profiling: Analysis, visualization and identification of somatic LINE-1 insertions in ovarian cancer.

Tang Z, Steranka JP, Ma S, Grivainis M, Rodić N, Huang CR, Shih IM, Wang TL, Boeke JD, Fenyö D, Burns KH. Tang Z, et al. Among authors: burns kh. Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):E733-E740. doi: 10.1073/pnas.1619797114. Epub 2017 Jan 17. Proc Natl Acad Sci U S A. 2017. PMID: 28096347 Free PMC article.

9

Insertion and deletion polymorphisms of the ancient AluS family in the human genome.

Kryatova MS, Steranka JP, Burns KH, Payer LM. Kryatova MS, et al. Among authors: burns kh. Mob DNA. 2017 Apr 24;8:6. doi: 10.1186/s13100-017-0089-9. eCollection 2017. Mob DNA. 2017. PMID: 28450901 Free PMC article.

10

Structural variants caused by Alu insertions are associated with risks for many human diseases.

Payer LM, Steranka JP, Yang WR, Kryatova M, Medabalimi S, Ardeljan D, Liu C, Boeke JD, Avramopoulos D, Burns KH. Payer LM, et al. Among authors: burns kh. Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3984-E3992. doi: 10.1073/pnas.1704117114. Epub 2017 May 2. Proc Natl Acad Sci U S A. 2017. PMID: 28465436 Free PMC article.

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