Xin H - Search Results

1

Artificial-cell-type aware cell-type classification in CITE-seq.

Lian Q, Xin H, Ma J, Konnikova L, Chen W, Gu J, Chen K. Lian Q, et al. Among authors: xin h. Bioinformatics. 2020 Jul 1;36(Suppl_1):i542-i550. doi: 10.1093/bioinformatics/btaa467. Bioinformatics. 2020. PMID: 32657383 Free PMC article.

2

A Bayesian mixture model for clustering droplet-based single-cell transcriptomic data from population studies.

Sun Z, Chen L, Xin H, Jiang Y, Huang Q, Cillo AR, Tabib T, Kolls JK, Bruno TC, Lafyatis R, Vignali DAA, Chen K, Ding Y, Hu M, Chen W. Sun Z, et al. Among authors: xin h. Nat Commun. 2019 Apr 9;10(1):1649. doi: 10.1038/s41467-019-09639-3. Nat Commun. 2019. PMID: 30967541 Free PMC article.

3

BREM-SC: a bayesian random effects mixture model for joint clustering single cell multi-omics data.

Wang X, Sun Z, Zhang Y, Xu Z, Xin H, Huang H, Duerr RH, Chen K, Ding Y, Chen W. Wang X, et al. Among authors: xin h. Nucleic Acids Res. 2020 Jun 19;48(11):5814-5824. doi: 10.1093/nar/gkaa314. Nucleic Acids Res. 2020. PMID: 32379315 Free PMC article.

4

GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing.

Xin H, Lian Q, Jiang Y, Luo J, Wang X, Erb C, Xu Z, Zhang X, Heidrich-O'Hare E, Yan Q, Duerr RH, Chen K, Chen W. Xin H, et al. Genome Biol. 2020 Jul 30;21(1):188. doi: 10.1186/s13059-020-02084-2. Genome Biol. 2020. PMID: 32731885 Free PMC article.

5

Deep-learning-based Prediction of Late Age-Related Macular Degeneration Progression.

Yan Q, Weeks DE, Xin H, Swaroop A, Chew EY, Huang H, Ding Y, Chen W. Yan Q, et al. Among authors: xin h. Nat Mach Intell. 2020 Feb;2(2):141-150. doi: 10.1038/s42256-020-0154-9. Epub 2020 Feb 14. Nat Mach Intell. 2020. PMID: 32285025 Free PMC article.

6

GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping.

Alser M, Hassan H, Xin H, Ergin O, Mutlu O, Alkan C. Alser M, et al. Among authors: xin h. Bioinformatics. 2017 Nov 1;33(21):3355-3363. doi: 10.1093/bioinformatics/btx342. Bioinformatics. 2017. PMID: 28575161 Free PMC article.

7

Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping.

Xin H, Greth J, Emmons J, Pekhimenko G, Kingsford C, Alkan C, Mutlu O. Xin H, et al. Bioinformatics. 2015 May 15;31(10):1553-60. doi: 10.1093/bioinformatics/btu856. Epub 2015 Jan 10. Bioinformatics. 2015. PMID: 25577434 Free PMC article.

8

Optimal seed solver: optimizing seed selection in read mapping.

Xin H, Nahar S, Zhu R, Emmons J, Pekhimenko G, Kingsford C, Alkan C, Mutlu O. Xin H, et al. Bioinformatics. 2016 Jun 1;32(11):1632-42. doi: 10.1093/bioinformatics/btv670. Epub 2015 Nov 14. Bioinformatics. 2016. PMID: 26568624 Free PMC article.

9

Context-aware seeds for read mapping.

Xin H, Shao M, Kingsford C. Xin H, et al. Algorithms Mol Biol. 2020 May 23;15:10. doi: 10.1186/s13015-020-00172-3. eCollection 2020. Algorithms Mol Biol. 2020. PMID: 32489399 Free PMC article.

10

Accelerating read mapping with FastHASH.

Xin H, Lee D, Hormozdiari F, Yedkar S, Mutlu O, Alkan C. Xin H, et al. BMC Genomics. 2013;14 Suppl 1(Suppl 1):S13. doi: 10.1186/1471-2164-14-S1-S13. Epub 2013 Jan 21. BMC Genomics. 2013. PMID: 23369189 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

2,236 results

Search Page

Filters