Khaniya U - Search Results

1

Hydrogen bond network analysis reveals the pathway for the proton transfer in the E-channel of T. thermophilus Complex I.

Khaniya U, Gupta C, Cai X, Mao J, Kaur D, Zhang Y, Singharoy A, Gunner MR. Khaniya U, et al. Biochim Biophys Acta Bioenerg. 2020 Oct 1;1861(10):148240. doi: 10.1016/j.bbabio.2020.148240. Epub 2020 Jun 9. Biochim Biophys Acta Bioenerg. 2020. PMID: 32531220 Free article.

2

Charge Transfer and Chemo-Mechanical Coupling in Respiratory Complex I.

Gupta C, Khaniya U, Chan CK, Dehez F, Shekhar M, Gunner MR, Sazanov L, Chipot C, Singharoy A. Gupta C, et al. Among authors: khaniya u. J Am Chem Soc. 2020 May 20;142(20):9220-9230. doi: 10.1021/jacs.9b13450. Epub 2020 May 11. J Am Chem Soc. 2020. PMID: 32347721

3

Identifying the proton loading site cluster in the ba₃ cytochrome c oxidase that loads and traps protons.

Cai X, Son CY, Mao J, Kaur D, Zhang Y, Khaniya U, Cui Q, Gunner MR. Cai X, et al. Among authors: khaniya u. Biochim Biophys Acta Bioenerg. 2020 Oct 1;1861(10):148239. doi: 10.1016/j.bbabio.2020.148239. Epub 2020 Jun 10. Biochim Biophys Acta Bioenerg. 2020. PMID: 32531221 Free article.

4

Comparison of proton transfer paths to the Q_A and Q_B sites of the Rb. sphaeroides photosynthetic reaction centers.

Wei RJ, Zhang Y, Mao J, Kaur D, Khaniya U, Gunner MR. Wei RJ, et al. Among authors: khaniya u. Photosynth Res. 2022 May;152(2):153-165. doi: 10.1007/s11120-022-00906-x. Epub 2022 Mar 28. Photosynth Res. 2022. PMID: 35344134

5

Relative stability of the S₂ isomers of the oxygen evolving complex of photosystem II.

Kaur D, Szejgis W, Mao J, Amin M, Reiss KM, Askerka M, Cai X, Khaniya U, Zhang Y, Brudvig GW, Batista VS, Gunner MR. Kaur D, et al. Among authors: khaniya u. Photosynth Res. 2019 Sep;141(3):331-341. doi: 10.1007/s11120-019-00637-6. Epub 2019 Apr 2. Photosynth Res. 2019. PMID: 30941614

6

Protein Motifs for Proton Transfers That Build the Transmembrane Proton Gradient.

Kaur D, Khaniya U, Zhang Y, Gunner MR. Kaur D, et al. Among authors: khaniya u. Front Chem. 2021 Jun 15;9:660954. doi: 10.3389/fchem.2021.660954. eCollection 2021. Front Chem. 2021. PMID: 34211960 Free PMC article. Review.

7

Poor Person's pH Simulation of Membrane Proteins.

Gupta C, Khaniya U, Vant JW, Shekhar M, Mao J, Gunner MR, Singharoy A. Gupta C, et al. Among authors: khaniya u. Methods Mol Biol. 2021;2315:197-217. doi: 10.1007/978-1-0716-1468-6_12. Methods Mol Biol. 2021. PMID: 34302678

8

Characterizing Protein Protonation Microstates Using Monte Carlo Sampling.

Khaniya U, Mao J, Wei RJ, Gunner MR. Khaniya U, et al. J Phys Chem B. 2022 Apr 7;126(13):2476-2485. doi: 10.1021/acs.jpcb.2c00139. Epub 2022 Mar 28. J Phys Chem B. 2022. PMID: 35344367 Free PMC article.

9

Finding the E-channel proton loading sites by calculating the ensemble of protonation microstates.

Uddin MR, Khaniya U, Gupta C, Mao J, Ranepura GA, Wei RJ, Ortiz-Soto J, Singharoy A, Gunner MR. Uddin MR, et al. Among authors: khaniya u. Biochim Biophys Acta Bioenerg. 2025 Jan 1;1866(1):149518. doi: 10.1016/j.bbabio.2024.149518. Epub 2024 Oct 21. Biochim Biophys Acta Bioenerg. 2025. PMID: 39442784

10

Towards a structural and functional analysis of the immunoglobulin-fold proteome.

Tawfeeq C, Song J, Khaniya U, Madej T, Wang J, Youkharibache P, Abrol R. Tawfeeq C, et al. Among authors: khaniya u. Adv Protein Chem Struct Biol. 2024;138:135-178. doi: 10.1016/bs.apcsb.2023.11.002. Epub 2024 Jan 3. Adv Protein Chem Struct Biol. 2024. PMID: 38220423 Review.

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