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Context-aware seeds for read mapping.
Xin H, Shao M, Kingsford C. Xin H, et al. Algorithms Mol Biol. 2020 May 23;15:10. doi: 10.1186/s13015-020-00172-3. eCollection 2020. Algorithms Mol Biol. 2020. PMID: 32489399 Free PMC article.
Optimal seed solver: optimizing seed selection in read mapping.
Xin H, Nahar S, Zhu R, Emmons J, Pekhimenko G, Kingsford C, Alkan C, Mutlu O. Xin H, et al. Bioinformatics. 2016 Jun 1;32(11):1632-42. doi: 10.1093/bioinformatics/btv670. Epub 2015 Nov 14. Bioinformatics. 2016. PMID: 26568624 Free PMC article.
Accelerating read mapping with FastHASH.
Xin H, Lee D, Hormozdiari F, Yedkar S, Mutlu O, Alkan C. Xin H, et al. BMC Genomics. 2013;14 Suppl 1(Suppl 1):S13. doi: 10.1186/1471-2164-14-S1-S13. Epub 2013 Jan 21. BMC Genomics. 2013. PMID: 23369189 Free PMC article.
Artificial-cell-type aware cell-type classification in CITE-seq.
Lian Q, Xin H, Ma J, Konnikova L, Chen W, Gu J, Chen K. Lian Q, et al. Among authors: xin h. Bioinformatics. 2020 Jul 1;36(Suppl_1):i542-i550. doi: 10.1093/bioinformatics/btaa467. Bioinformatics. 2020. PMID: 32657383 Free PMC article.
Fast and accurate mapping of Complete Genomics reads.
Lee D, Hormozdiari F, Xin H, Hach F, Mutlu O, Alkan C. Lee D, et al. Among authors: xin h. Methods. 2015 Jun;79-80:3-10. doi: 10.1016/j.ymeth.2014.10.012. Epub 2014 Oct 22. Methods. 2015. PMID: 25461772 Free PMC article.
2,248 results