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Generation and Profiling of 2,135 Human ESC Lines for the Systematic Analyses of Cell States Perturbed by Inducing Single Transcription Factors.
Nakatake Y, Ko SBH, Sharov AA, Wakabayashi S, Murakami M, Sakota M, Chikazawa N, Ookura C, Sato S, Ito N, Ishikawa-Hirayama M, Mak SS, Jakt LM, Ueno T, Hiratsuka K, Matsushita M, Goparaju SK, Akiyama T, Ishiguro KI, Oda M, Gouda N, Umezawa A, Akutsu H, Nishimura K, Matoba R, Ohara O, Ko MSH. Nakatake Y, et al. Cell Rep. 2020 May 19;31(7):107655. doi: 10.1016/j.celrep.2020.107655. Cell Rep. 2020. PMID: 32433964 Free article.
Neural differentiation of human embryonic stem cells induced by the transgene-mediated overexpression of single transcription factors.
Matsushita M, Nakatake Y, Arai I, Ibata K, Kohda K, Goparaju SK, Murakami M, Sakota M, Chikazawa-Nohtomi N, Ko SBH, Kanai T, Yuzaki M, Ko MSH. Matsushita M, et al. Among authors: nakatake y. Biochem Biophys Res Commun. 2017 Aug 19;490(2):296-301. doi: 10.1016/j.bbrc.2017.06.039. Epub 2017 Jun 10. Biochem Biophys Res Commun. 2017. PMID: 28610919
Establishment of a rapid and footprint-free protocol for differentiation of human embryonic stem cells into pancreatic endocrine cells with synthetic mRNAs encoding transcription factors.
Ida H, Akiyama T, Ishiguro K, Goparaju SK, Nakatake Y, Chikazawa-Nohtomi N, Sato S, Kimura H, Yokoyama Y, Nagino M, Ko MSH, Ko SBH. Ida H, et al. Among authors: nakatake y. Stem Cell Res Ther. 2018 Oct 25;9(1):277. doi: 10.1186/s13287-018-1038-3. Stem Cell Res Ther. 2018. PMID: 30359326 Free PMC article.
Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors.
Nishiyama A, Xin L, Sharov AA, Thomas M, Mowrer G, Meyers E, Piao Y, Mehta S, Yee S, Nakatake Y, Stagg C, Sharova L, Correa-Cerro LS, Bassey U, Hoang H, Kim E, Tapnio R, Qian Y, Dudekula D, Zalzman M, Li M, Falco G, Yang HT, Lee SL, Monti M, Stanghellini I, Islam MN, Nagaraja R, Goldberg I, Wang W, Longo DL, Schlessinger D, Ko MS. Nishiyama A, et al. Among authors: nakatake y. Cell Stem Cell. 2009 Oct 2;5(4):420-33. doi: 10.1016/j.stem.2009.07.012. Cell Stem Cell. 2009. PMID: 19796622 Free PMC article.
Systematic repression of transcription factors reveals limited patterns of gene expression changes in ES cells.
Nishiyama A, Sharov AA, Piao Y, Amano M, Amano T, Hoang HG, Binder BY, Tapnio R, Bassey U, Malinou JN, Correa-Cerro LS, Yu H, Xin L, Meyers E, Zalzman M, Nakatake Y, Stagg C, Sharova L, Qian Y, Dudekula D, Sheer S, Cadet JS, Hirata T, Yang HT, Goldberg I, Evans MK, Longo DL, Schlessinger D, Ko MS. Nishiyama A, et al. Among authors: nakatake y. Sci Rep. 2013;3:1390. doi: 10.1038/srep01390. Sci Rep. 2013. PMID: 23462645 Free PMC article.
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