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Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable.
Mavian C, Pond SK, Marini S, Magalis BR, Vandamme AM, Dellicour S, Scarpino SV, Houldcroft C, Villabona-Arenas J, Paisie TK, Trovão NS, Boucher C, Zhang Y, Scheuermann RH, Gascuel O, Lam TT, Suchard MA, Abecasis A, Wilkinson E, de Oliveira T, Bento AI, Schmidt HA, Martin D, Hadfield J, Faria N, Grubaugh ND, Neher RA, Baele G, Lemey P, Stadler T, Albert J, Crandall KA, Leitner T, Stamatakis A, Prosperi M, Salemi M. Mavian C, et al. Among authors: scarpino sv. Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12522-12523. doi: 10.1073/pnas.2007295117. Epub 2020 May 7. Proc Natl Acad Sci U S A. 2020. PMID: 32381734 Free PMC article. No abstract available.
The effect of human mobility and control measures on the COVID-19 epidemic in China.
Kraemer MUG, Yang CH, Gutierrez B, Wu CH, Klein B, Pigott DM; Open COVID-19 Data Working Group; du Plessis L, Faria NR, Li R, Hanage WP, Brownstein JS, Layan M, Vespignani A, Tian H, Dye C, Pybus OG, Scarpino SV. Kraemer MUG, et al. Among authors: scarpino sv. Science. 2020 May 1;368(6490):493-497. doi: 10.1126/science.abb4218. Epub 2020 Mar 25. Science. 2020. PMID: 32213647 Free PMC article.
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence.
Kraemer MUG, Hill V, Ruis C, Dellicour S, Bajaj S, McCrone JT, Baele G, Parag KV, Battle AL, Gutierrez B, Jackson B, Colquhoun R, O'Toole Á, Klein B, Vespignani A; COVID-19 Genomics UK (COG-UK) Consortium; Volz E, Faria NR, Aanensen DM, Loman NJ, du Plessis L, Cauchemez S, Rambaut A, Scarpino SV, Pybus OG. Kraemer MUG, et al. Among authors: scarpino sv. Science. 2021 Aug 20;373(6557):889-895. doi: 10.1126/science.abj0113. Epub 2021 Jul 22. Science. 2021. PMID: 34301854 Free PMC article.
Tracking the 2022 monkeypox outbreak with epidemiological data in real-time.
Kraemer MUG, Tegally H, Pigott DM, Dasgupta A, Sheldon J, Wilkinson E, Schultheiss M, Han A, Oglia M, Marks S, Kanner J, O'Brien K, Dandamudi S, Rader B, Sewalk K, Bento AI, Scarpino SV, de Oliveira T, Bogoch II, Katz R, Brownstein JS. Kraemer MUG, et al. Among authors: scarpino sv. Lancet Infect Dis. 2022 Jul;22(7):941-942. doi: 10.1016/S1473-3099(22)00359-0. Epub 2022 Jun 9. Lancet Infect Dis. 2022. PMID: 35690074 Free PMC article. No abstract available.
Opinion: Mathematical models: a key tool for outbreak response.
Lofgren ET, Halloran ME, Rivers CM, Drake JM, Porco TC, Lewis B, Yang W, Vespignani A, Shaman J, Eisenberg JN, Eisenberg MC, Marathe M, Scarpino SV, Alexander KA, Meza R, Ferrari MJ, Hyman JM, Meyers LA, Eubank S. Lofgren ET, et al. Among authors: scarpino sv. Proc Natl Acad Sci U S A. 2014 Dec 23;111(51):18095-6. doi: 10.1073/pnas.1421551111. Epub 2014 Dec 10. Proc Natl Acad Sci U S A. 2014. PMID: 25502594 Free PMC article. No abstract available.
Uncovering the hidden cost of bed bugs.
Scarpino SV, Althouse BM. Scarpino SV, et al. Proc Natl Acad Sci U S A. 2019 Apr 9;116(15):7160-7162. doi: 10.1073/pnas.1902404116. Epub 2019 Mar 22. Proc Natl Acad Sci U S A. 2019. PMID: 30902893 Free PMC article. No abstract available.
The effect of human mobility and control measures on the COVID-19 epidemic in China.
Kraemer MUG, Yang CH, Gutierrez B, Wu CH, Klein B, Pigott DM; open COVID-19 data working group; du Plessis L, Faria NR, Li R, Hanage WP, Brownstein JS, Layan M, Vespignani A, Tian H, Dye C, Cauchemez S, Pybus OG, Scarpino SV. Kraemer MUG, et al. Among authors: scarpino sv. medRxiv [Preprint]. 2020 Mar 6:2020.03.02.20026708. doi: 10.1101/2020.03.02.20026708. medRxiv. 2020. Update in: Science. 2020 May 1;368(6490):493-497. doi: 10.1126/science.abb4218 PMID: 32511452 Free PMC article. Updated. Preprint.
Mask-wearing and control of SARS-CoV-2 transmission in the USA: a cross-sectional study.
Rader B, White LF, Burns MR, Chen J, Brilliant J, Cohen J, Shaman J, Brilliant L, Kraemer MUG, Hawkins JB, Scarpino SV, Astley CM, Brownstein JS. Rader B, et al. Among authors: scarpino sv. Lancet Digit Health. 2021 Mar;3(3):e148-e157. doi: 10.1016/S2589-7500(20)30293-4. Epub 2021 Jan 19. Lancet Digit Health. 2021. PMID: 33483277 Free PMC article.
79 results