Paudel BP - Search Results

1

CHD4 slides nucleosomes by decoupling entry- and exit-side DNA translocation.

Zhong Y, Paudel BP, Ryan DP, Low JKK, Franck C, Patel K, Bedward MJ, Torrado M, Payne RJ, van Oijen AM, Mackay JP. Zhong Y, et al. Among authors: paudel bp. Nat Commun. 2020 Mar 23;11(1):1519. doi: 10.1038/s41467-020-15183-2. Nat Commun. 2020. PMID: 32251276 Free PMC article.

2

Spatial and temporal organization of RecA in the Escherichia coli DNA-damage response.

Ghodke H, Paudel BP, Lewis JS, Jergic S, Gopal K, Romero ZJ, Wood EA, Woodgate R, Cox MM, van Oijen AM. Ghodke H, et al. Among authors: paudel bp. Elife. 2019 Feb 5;8:e42761. doi: 10.7554/eLife.42761. Elife. 2019. PMID: 30717823 Free PMC article.

3

A mechanism for the extension and unfolding of parallel telomeric G-quadruplexes by human telomerase at single-molecule resolution.

Paudel BP, Moye AL, Abou Assi H, El-Khoury R, Cohen SB, Holien JK, Birrento ML, Samosorn S, Intharapichai K, Tomlinson CG, Teulade-Fichou MP, González C, Beck JL, Damha MJ, van Oijen AM, Bryan TM. Paudel BP, et al. Elife. 2020 Jul 29;9:e56428. doi: 10.7554/eLife.56428. Elife. 2020. PMID: 32723475 Free PMC article.

4

An α-Cyanostilbene Derivative for the Enhanced Detection and Imaging of Amyloid Fibril Aggregates.

Marzano NR, Wray KM, Johnston CL, Paudel BP, Hong Y, van Oijen A, Ecroyd H. Marzano NR, et al. Among authors: paudel bp. ACS Chem Neurosci. 2020 Dec 16;11(24):4191-4202. doi: 10.1021/acschemneuro.0c00478. Epub 2020 Nov 23. ACS Chem Neurosci. 2020. PMID: 33226775

5

Single-molecule fluorescence-based approach reveals novel mechanistic insights into human small heat shock protein chaperone function.

Johnston CL, Marzano NR, Paudel BP, Wright G, Benesch JLP, van Oijen AM, Ecroyd H. Johnston CL, et al. Among authors: paudel bp. J Biol Chem. 2021 Jan-Jun;296:100161. doi: 10.1074/jbc.RA120.015419. Epub 2020 Dec 10. J Biol Chem. 2021. PMID: 33288678 Free PMC article.

6

Mechanism of transcription modulation by the transcription-repair coupling factor.

Paudel BP, Xu ZQ, Jergic S, Oakley AJ, Sharma N, Brown SHJ, Bouwer JC, Lewis PJ, Dixon NE, van Oijen AM, Ghodke H. Paudel BP, et al. Nucleic Acids Res. 2022 Jun 10;50(10):5688-5712. doi: 10.1093/nar/gkac449. Nucleic Acids Res. 2022. PMID: 35641110 Free PMC article.

7

The role of auxiliary domains in modulating CHD4 activity suggests mechanistic commonality between enzyme families.

Zhong Y, Moghaddas Sani H, Paudel BP, Low JKK, Silva APG, Mueller S, Deshpande C, Panjikar S, Reid XJ, Bedward MJ, van Oijen AM, Mackay JP. Zhong Y, et al. Among authors: paudel bp. Nat Commun. 2022 Dec 6;13(1):7524. doi: 10.1038/s41467-022-35002-0. Nat Commun. 2022. PMID: 36473839 Free PMC article.

8

Real-time single-molecule observation of chaperone-assisted protein folding.

Marzano NR, Paudel BP, van Oijen AM, Ecroyd H. Marzano NR, et al. Among authors: paudel bp. Sci Adv. 2022 Dec 14;8(50):eadd0922. doi: 10.1126/sciadv.add0922. Epub 2022 Dec 14. Sci Adv. 2022. PMID: 36516244 Free PMC article.

9

Single-molecule visualization of sequence-specific RNA binding by a designer PPR protein.

Marzano N, Johnston B, Paudel BP, Schmidberger J, Jergic S, Böcking T, Agostino M, Small I, van Oijen AM, Bond CS. Marzano N, et al. Among authors: paudel bp. Nucleic Acids Res. 2024 Dec 11;52(22):14154-14170. doi: 10.1093/nar/gkae984. Nucleic Acids Res. 2024. PMID: 39530228 Free PMC article.

10

RNA folding dynamics using laser-assisted single-molecule refolding.

Paudel B, Rueda D. Paudel B, et al. Methods Mol Biol. 2014;1086:289-307. doi: 10.1007/978-1-62703-667-2_17. Methods Mol Biol. 2014. PMID: 24136611

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