Saunders LM - Search Results

1

Dimensionality reduction by UMAP to visualize physical and genetic interactions.

Dorrity MW, Saunders LM, Queitsch C, Fields S, Trapnell C. Dorrity MW, et al. Among authors: saunders lm. Nat Commun. 2020 Mar 24;11(1):1537. doi: 10.1038/s41467-020-15351-4. Nat Commun. 2020. PMID: 32210240 Free PMC article.

2

Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana.

Jean-Baptiste K, McFaline-Figueroa JL, Alexandre CM, Dorrity MW, Saunders L, Bubb KL, Trapnell C, Fields S, Queitsch C, Cuperus JT. Jean-Baptiste K, et al. Plant Cell. 2019 May;31(5):993-1011. doi: 10.1105/tpc.18.00785. Epub 2019 Mar 28. Plant Cell. 2019. PMID: 30923229 Free PMC article.

3

Thyroid hormone regulates distinct paths to maturation in pigment cell lineages.

Saunders LM, Mishra AK, Aman AJ, Lewis VM, Toomey MB, Packer JS, Qiu X, McFaline-Figueroa JL, Corbo JC, Trapnell C, Parichy DM. Saunders LM, et al. Elife. 2019 May 29;8:e45181. doi: 10.7554/eLife.45181. Elife. 2019. PMID: 31140974 Free PMC article.

4

Massively multiplex chemical transcriptomics at single-cell resolution.

Srivatsan SR, McFaline-Figueroa JL, Ramani V, Saunders L, Cao J, Packer J, Pliner HA, Jackson DL, Daza RM, Christiansen L, Zhang F, Steemers F, Shendure J, Trapnell C. Srivatsan SR, et al. Science. 2020 Jan 3;367(6473):45-51. doi: 10.1126/science.aax6234. Epub 2019 Dec 5. Science. 2020. PMID: 31806696 Free PMC article.

5

Inferring Causal Gene Regulatory Networks from Coupled Single-Cell Expression Dynamics Using Scribe.

Qiu X, Rahimzamani A, Wang L, Ren B, Mao Q, Durham T, McFaline-Figueroa JL, Saunders L, Trapnell C, Kannan S. Qiu X, et al. Cell Syst. 2020 Mar 25;10(3):265-274.e11. doi: 10.1016/j.cels.2020.02.003. Epub 2020 Mar 4. Cell Syst. 2020. PMID: 32135093 Free PMC article.

6

A-kinase-anchoring protein 1 (dAKAP1)-based signaling complexes coordinate local protein synthesis at the mitochondrial surface.

Gabrovsek L, Collins KB, Aggarwal S, Saunders LM, Lau HT, Suh D, Sancak Y, Trapnell C, Ong SE, Smith FD, Scott JD. Gabrovsek L, et al. Among authors: saunders lm. J Biol Chem. 2020 Jul 31;295(31):10749-10765. doi: 10.1074/jbc.RA120.013454. Epub 2020 Jun 1. J Biol Chem. 2020. PMID: 32482893 Free PMC article.

7

Nuclear oligo hashing improves differential analysis of single-cell RNA-seq.

Kim HJ, Booth G, Saunders L, Srivatsan S, McFaline-Figueroa JL, Trapnell C. Kim HJ, et al. Nat Commun. 2022 May 13;13(1):2666. doi: 10.1038/s41467-022-30309-4. Nat Commun. 2022. PMID: 35562344 Free PMC article.

8

Single-cell transcriptomic profiling of the zebrafish inner ear reveals molecularly distinct hair cell and supporting cell subtypes.

Shi T, Beaulieu MO, Saunders LM, Fabian P, Trapnell C, Segil N, Crump JG, Raible DW. Shi T, et al. Among authors: saunders lm. Elife. 2023 Jan 4;12:e82978. doi: 10.7554/eLife.82978. Elife. 2023. PMID: 36598134 Free PMC article.

9

Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy.

McFaline-Figueroa JL, Srivatsan S, Hill AJ, Gasperini M, Jackson DL, Saunders L, Domcke S, Regalado SG, Lazarchuck P, Alvarez S, Monnat RJ Jr, Shendure J, Trapnell C. McFaline-Figueroa JL, et al. bioRxiv [Preprint]. 2023 Jun 14:2023.03.10.531983. doi: 10.1101/2023.03.10.531983. bioRxiv. 2023. Update in: Cell Genom. 2024 Feb 14;4(2):100487. doi: 10.1016/j.xgen.2023.100487 PMID: 37398090 Free PMC article. Updated. Preprint.

10

Transcriptomic profiling of tissue environments critical for post-embryonic patterning and morphogenesis of zebrafish skin.

Aman AJ, Saunders LM, Carr AA, Srivatasan S, Eberhard C, Carrington B, Watkins-Chow D, Pavan WJ, Trapnell C, Parichy DM. Aman AJ, et al. Among authors: saunders lm. Elife. 2023 Sep 11;12:RP86670. doi: 10.7554/eLife.86670. Elife. 2023. PMID: 37695017 Free PMC article.

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